JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL10_chrX_154393377_154407332	0/0	t0011	1519	1	0	0	1	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0012	1521	1	0	0	1	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0013	1519	1	0	0	1	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0014	1520	1	0	0	1	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0015	1518	1	0	0	1	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0016	1520	1	1	0	0	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0017	1520	1	1	0	0	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0018	1520	1	0	0	0	0	1	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0019	1520	1	0	0	1	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0020	1520	1	0	0	1	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0021	1520	1	1	0	0	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL11_chr1_23686806_23701835	0/0	t0001	481	161	59	13	78	1	10	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/0	t0002	481	140	7	28	83	6	16	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/1	t0003	481	52	12	24	0	3	12	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/0	t0004	481	19	4	3	10	2	0	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	1/0	t0005	481	8	5	2	0	0	0	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/0	t0006	481	5	4	1	0	0	0	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/0	t0007	481	1	1	0	0	0	0	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/0	t0008	481	1	0	1	0	0	0	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/0	t0009	481	1	0	0	1	0	0	copy fasta	RPL11	chr1	23686806	23701835
RPL12_chr9_127442674_127456406	1/1	t0001	137	374	87	68	162	16	39	copy fasta	RPL12	chr9	127442674	127456406
RPL12_chr9_127442674_127456406	0/0	t0002	137	17	0	1	16	0	0	copy fasta	RPL12	chr9	127442674	127456406
RPL12_chr9_127442674_127456406	0/0	t0003	137	4	0	0	4	0	0	copy fasta	RPL12	chr9	127442674	127456406
RPL12_chr9_127442674_127456406	0/0	t0004	137	2	0	1	0	0	1	copy fasta	RPL12	chr9	127442674	127456406
RPL12_chr9_127442674_127456406	0/0	t0005	137	1	1	0	0	0	0	copy fasta	RPL12	chr9	127442674	127456406
RPL12_chr9_127442674_127456406	0/0	t0006	137	1	0	0	1	0	0	copy fasta	RPL12	chr9	127442674	127456406
RPL12_chr9_127442674_127456406	0/0	t0007	137	1	0	0	1	0	0	copy fasta	RPL12	chr9	127442674	127456406
RPL13A_chr19_49482608_49497308	1/1	t0001	516	292	71	58	117	10	34	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	t0002	516	11	0	2	0	1	8	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	t0003	518	10	8	2	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	t0004	516	8	1	2	0	3	2	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	t0005	516	4	4	0	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	t0006	516	4	4	0	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	t0007	516	3	0	0	3	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	t0008	516	3	3	0	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	t0009	516	1	0	1	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	t0010	516	1	0	1	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	t0011	516	1	1	0	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13_chr16_89555682_89569542	1/0	t0001	1552	311	68	70	125	14	33	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/1	t0002	1550	33	2	4	16	2	8	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0003	1550	10	9	0	0	0	1	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0004	1552	5	5	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0005	1552	5	1	0	4	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0006	1552	2	0	0	2	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0007	1552	2	2	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0008	1552	1	1	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0009	1551	1	0	0	0	0	1	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0010	1552	1	0	0	1	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0011	1552	1	1	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0012	1552	1	1	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542