JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL13_chr16_89555682_89569542	0/0	t0013	1552	1	1	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0014	1549	1	1	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0015	1549	1	1	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0016	1550	1	1	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0017	1550	1	0	0	1	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0018	1549	1	0	1	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0019	1549	1	1	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0020	1550	1	1	0	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0021	1550	1	0	0	1	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0022	1550	1	0	0	0	0	1	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0023	1552	1	0	0	1	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0024	1552	1	0	0	1	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	t0025	1552	1	0	1	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL14_chr3_40452339_40473587	0/0	t0001	6494	74	4	12	48	3	7	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0002	6489	66	7	16	25	5	13	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0003	6488	27	17	3	4	0	3	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0004	6489	19	0	2	14	0	3	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0005	6489	18	0	2	16	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0006	6489	14	0	1	13	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0007	6490	11	1	4	5	0	1	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0008	6489	8	0	0	8	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	1/0	t0009	6489	6	5	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0010	6490	6	5	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0011	6488	5	5	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0012	6489	5	5	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0013	6489	5	0	0	5	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0014	6489	5	3	2	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0015	6490	5	5	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0016	6493	4	0	0	1	0	3	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0017	6495	4	0	0	4	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0018	6495	4	0	0	3	0	1	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0019	6488	3	2	0	0	1	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0020	6493	3	2	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0021	6493	3	2	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0022	6494	3	0	2	0	0	1	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0023	6488	2	2	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0024	6487	2	2	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0025	6489	2	0	0	2	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0026	6487	2	1	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0027	6488	2	0	2	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0028	6495	2	0	0	2	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0029	6495	2	0	1	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0030	6493	2	0	0	0	0	2	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0031	6495	2	1	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0032	6496	2	0	0	1	0	1	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0033	6503	2	0	0	0	0	2	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0034	6489	2	0	0	2	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0035	6488	2	1	0	0	1	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0036	6488	2	0	0	2	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0037	6490	2	0	0	2	0	0	copy fasta	RPL14	chr3	40452339	40473587