Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B4GALNT2_chr17_49127769_49181840	0/0	t0024	7127	1	0	0	0	0	1	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0025	7127	1	0	0	0	0	1	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0026	7127	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0027	7127	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0028	7137	1	0	1	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0029	7127	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0030	7127	1	0	1	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0031	7127	1	0	1	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0032	7127	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0033	7127	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0034	7137	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0035	7137	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0036	7127	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0037	7127	1	0	0	0	0	1	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0038	7137	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0039	7137	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0040	7137	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0041	7137	1	0	1	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0042	7137	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0043	7137	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0044	7137	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0045	7137	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0046	7137	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0047	7137	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0048	7137	1	0	1	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0049	7137	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0050	7137	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0051	7137	1	0	1	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0052	7137	1	0	1	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0053	7154	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0054	7158	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0055	7156	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0056	7114	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0057	7145	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT3_chr12_454939_568509	0/0	t0001	2497	62	4	5	49	1	3	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	1/0	t0002	2497	56	24	18	7	1	5	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0003	2497	30	1	2	23	2	2	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0004	2496	21	3	4	11	1	2	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0005	2497	20	1	1	8	1	9	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/1	t0006	2496	13	1	7	0	4	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0007	2497	12	5	5	2	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0008	2497	10	1	1	4	0	4	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0009	2497	9	0	5	3	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0010	2497	8	0	5	0	2	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0011	2497	8	0	0	7	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0012	2497	6	0	0	6	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0013	2497	5	3	2	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0014	2497	5	0	0	5	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0015	2497	5	0	0	5	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0016	2497	5	5	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509