JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL14_chr3_40452339_40473587	0/0	t0088	6489	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0089	6488	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0090	6488	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0091	6489	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0092	6489	1	0	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0093	6490	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0094	6489	1	0	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0095	6489	1	0	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0096	6489	1	0	0	0	1	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0097	6489	1	0	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0098	6488	1	0	0	0	0	1	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0099	6488	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0100	6490	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0101	6489	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0102	6489	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0103	6489	1	0	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0104	6488	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0105	6488	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0106	6490	1	1	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0107	6491	1	0	0	0	0	1	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0108	6491	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0109	6490	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0110	6490	1	1	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0111	6490	1	1	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0112	6491	1	0	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0113	6490	1	0	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0114	6490	1	1	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0115	6489	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0116	6489	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0117	6488	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0118	6489	1	0	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0119	6490	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0120	6490	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0121	6489	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0122	6489	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0123	6490	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	t0124	6490	1	0	0	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL15_chr3_23912132_23925989	1/1	t0001	1541	294	37	50	169	10	26	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0002	1541	56	10	18	18	4	6	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0003	1541	35	15	10	1	2	7	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0004	1541	19	14	0	3	0	2	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0005	1541	9	0	0	9	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0006	1541	4	0	0	0	0	4	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0007	1539	4	4	0	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0008	1541	4	4	0	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0009	1541	3	0	0	3	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0010	1541	2	0	0	2	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0011	1541	2	0	0	2	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0012	1531	2	0	0	2	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0013	1541	2	2	0	0	0	0	copy fasta	RPL15	chr3	23912132	23925989