JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL15_chr3_23912132_23925989	0/0	t0014	1541	2	2	0	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0015	1541	2	2	0	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0016	1541	2	1	1	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0017	1541	1	0	0	0	0	1	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0018	1541	1	0	1	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0019	1541	1	0	0	1	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0020	1541	1	0	0	1	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0021	1541	1	1	0	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0022	1541	1	0	0	1	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0023	1541	1	0	1	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0024	1541	1	0	0	1	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0025	1541	1	1	0	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0026	1541	1	1	0	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0027	1541	1	0	1	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	t0028	1541	1	0	0	1	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL17_chr18_49483481_49497465	1/0	t0001	60	445	94	72	216	18	44	copy fasta	RPL17	chr18	49483481	49497465
RPL18A_chr19_17854910_17868319	0/0	t0001	104	403	90	78	173	18	44	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	t0002	104	3	3	0	0	0	0	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	t0003	104	2	0	0	0	0	2	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	t0004	104	1	1	0	0	0	0	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	t0005	104	1	0	0	1	0	0	copy fasta	RPL18A	chr19	17854910	17868319
RPL18_chr19_48610331_48624178	1/1	t0001	77	381	90	75	154	14	46	copy fasta	RPL18	chr19	48610331	48624178
RPL18_chr19_48610331_48624178	0/0	t0002	77	1	0	1	0	0	0	copy fasta	RPL18	chr19	48610331	48624178
RPL19_chr17_39195283_39209732	1/1	t0001	147	393	90	78	163	18	42	copy fasta	RPL19	chr17	39195283	39209732
RPL19_chr17_39195283_39209732	0/0	t0002	147	3	3	0	0	0	0	copy fasta	RPL19	chr17	39195283	39209732
RPL19_chr17_39195283_39209732	0/0	t0003	147	1	0	0	1	0	0	copy fasta	RPL19	chr17	39195283	39209732
RPL19_chr17_39195283_39209732	0/0	t0004	147	1	1	0	0	0	0	copy fasta	RPL19	chr17	39195283	39209732
RPL21_chr13_27246558_27261568	0/0	t0001	84	424	96	76	196	14	42	copy fasta	RPL21	chr13	27246558	27261568
RPL22L1_chr3_170859875_170875195	1/1	t0001	1534	323	75	59	144	9	34	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0002	1534	113	2	18	80	3	10	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0003	1534	4	4	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0004	1534	4	4	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0005	1534	3	3	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0006	1534	2	2	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0007	1534	1	0	1	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0008	1534	1	1	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0009	1534	1	1	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0010	1534	1	0	0	0	0	1	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0011	1534	1	1	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0012	1534	1	1	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0013	1534	1	1	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0014	1534	1	0	0	0	0	1	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	t0015	1534	1	1	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22_chr1_6180020_6204595	1/1	t0001	1675	290	77	63	105	13	30	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0002	1675	46	4	2	32	1	7	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0003	1675	9	0	0	9	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0004	1675	9	8	1	0	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0005	1675	5	5	0	0	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0006	1675	2	0	2	0	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0007	1675	2	2	0	0	0	0	copy fasta	RPL22	chr1	6180020	6204595