JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL22_chr1_6180020_6204595	0/0	t0008	1675	2	2	0	0	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0009	1675	2	0	0	2	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0010	1675	1	0	0	1	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0011	1675	1	0	0	1	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0012	1675	1	0	0	0	0	1	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0013	1675	1	0	0	1	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	t0014	1675	1	0	0	1	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL23A_chr17_28714985_28729359	1/1	t0001	500	303	76	61	110	11	43	copy fasta	RPL23A	chr17	28714985	28729359
RPL23A_chr17_28714985_28729359	0/0	t0002	502	50	11	7	27	1	4	copy fasta	RPL23A	chr17	28714985	28729359
RPL23A_chr17_28714985_28729359	0/0	t0003	504	4	0	0	3	0	1	copy fasta	RPL23A	chr17	28714985	28729359
RPL23A_chr17_28714985_28729359	0/0	t0004	504	1	1	0	0	0	0	copy fasta	RPL23A	chr17	28714985	28729359
RPL23_chr17_38842860_38858721	0/0	t0001	2282	109	9	34	46	9	11	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/1	t0002	2279	72	0	3	64	1	3	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0003	2284	67	12	7	39	2	7	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0004	2279	58	16	20	16	1	5	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0005	2282	30	1	0	27	0	2	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0006	2282	25	9	10	0	1	5	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0007	2283	13	13	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0008	2282	7	7	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0009	2282	5	5	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0010	2282	4	4	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0011	2282	4	4	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0012	2282	4	4	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0013	2282	3	0	0	0	0	3	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0014	2279	2	2	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0015	2279	2	0	0	2	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0016	2282	2	0	2	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	1/0	t0017	2284	1	0	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0018	2283	1	1	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0019	2282	1	0	0	1	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0020	2282	1	0	1	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0021	2282	1	0	1	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0022	2282	1	0	0	0	0	1	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0023	2279	1	0	0	0	0	1	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0024	2282	1	1	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0025	2328	1	1	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0026	2282	1	1	0	0	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL23_chr17_38842860_38858721	0/0	t0027	2282	1	0	0	1	0	0	copy fasta	RPL23	chr17	38842860	38858721
RPL24_chr3_101676091_101691718	1/1	t0001	87	439	92	72	219	14	40	copy fasta	RPL24	chr3	101676091	101691718
RPL24_chr3_101676091_101691718	0/0	t0002	87	3	0	0	3	0	0	copy fasta	RPL24	chr3	101676091	101691718
RPL24_chr3_101676091_101691718	0/0	t0003	87	1	0	0	1	0	0	copy fasta	RPL24	chr3	101676091	101691718
RPL24_chr3_101676091_101691718	0/0	t0004	87	1	0	0	1	0	0	copy fasta	RPL24	chr3	101676091	101691718
RPL26L1_chr5_172954424_172974771	1/1	t0001	285	364	89	65	152	15	41	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26L1_chr5_172954424_172974771	0/0	t0002	285	21	7	5	5	1	3	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26L1_chr5_172954424_172974771	0/0	t0003	285	1	0	0	1	0	0	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26_chr17_8372516_8388193	1/1	t0001	91	416	95	69	190	16	44	copy fasta	RPL26	chr17	8372516	8388193
RPL26_chr17_8372516_8388193	0/0	t0002	91	2	0	0	2	0	0	copy fasta	RPL26	chr17	8372516	8388193
RPL26_chr17_8372516_8388193	0/0	t0003	91	2	0	0	2	0	0	copy fasta	RPL26	chr17	8372516	8388193
RPL26_chr17_8372516_8388193	0/0	t0004	91	1	1	0	0	0	0	copy fasta	RPL26	chr17	8372516	8388193
RPL26_chr17_8372516_8388193	0/0	t0005	91	1	0	1	0	0	0	copy fasta	RPL26	chr17	8372516	8388193