JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL27A_chr11_8677792_8694872	1/0	t0001	4089	175	35	22	90	6	21	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0002	4092	39	1	9	25	1	3	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0003	4093	27	2	10	11	1	3	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0004	4092	20	2	6	11	1	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0005	4094	14	0	2	10	0	2	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0006	4091	13	5	2	3	1	2	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0007	4093	12	2	1	7	0	2	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0008	4087	11	4	0	6	0	1	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0009	4089	9	6	3	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0010	4085	8	3	2	0	2	1	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0011	4092	7	7	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0012	4088	6	1	0	5	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0013	4094	6	0	1	3	0	2	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0014	4086	5	4	1	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0015	4087	5	0	0	4	0	1	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0016	4093	5	0	0	5	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0017	4092	4	0	4	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/1	t0018	4089	4	0	2	0	1	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0019	4089	3	0	1	0	0	2	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0020	4088	3	2	1	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0021	4084	3	2	1	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0022	4094	3	3	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0023	4095	3	3	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0024	4092	3	0	0	2	1	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0025	4089	2	2	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0026	4090	2	2	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0027	4089	2	2	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0028	4089	2	0	0	2	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0029	4090	2	0	1	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0030	4089	2	0	1	0	0	1	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0031	4093	2	0	0	2	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0032	4093	2	0	1	0	0	1	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0033	4089	2	0	0	2	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0034	4090	2	0	0	1	1	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0035	4091	2	0	0	2	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0036	4094	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0037	4092	1	0	0	0	1	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0038	4089	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0039	4093	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0040	4089	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0041	4089	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0042	4089	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0043	4089	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0044	4089	1	0	1	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0045	4090	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0046	4091	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0047	4091	1	0	1	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0048	4091	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0049	4089	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0050	4086	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872