JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL27A_chr11_8677792_8694872	0/0	t0051	4085	1	0	1	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0052	4093	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0053	4092	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0054	4092	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0055	4093	1	0	0	0	0	1	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0056	4093	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0057	4091	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0058	4094	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0059	4089	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0060	4094	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0061	4091	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0062	4092	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0063	4092	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0064	4092	1	0	0	0	0	1	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0065	4093	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0066	4099	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0067	4098	1	0	1	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0068	4100	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0069	4063	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0070	4092	1	0	1	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	t0071	4094	1	0	0	1	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27_chr17_42993419_43007959	0/1	t0001	94	317	58	62	136	12	48	copy fasta	RPL27	chr17	42993419	43007959
RPL27_chr17_42993419_43007959	0/0	t0002	95	16	16	0	0	0	0	copy fasta	RPL27	chr17	42993419	43007959
RPL27_chr17_42993419_43007959	1/0	t0003	95	15	11	3	0	0	0	copy fasta	RPL27	chr17	42993419	43007959
RPL27_chr17_42993419_43007959	0/0	t0004	91	4	0	1	3	0	0	copy fasta	RPL27	chr17	42993419	43007959
RPL27_chr17_42993419_43007959	0/0	t0005	94	3	0	0	3	0	0	copy fasta	RPL27	chr17	42993419	43007959
RPL27_chr17_42993419_43007959	0/0	t0006	94	1	1	0	0	0	0	copy fasta	RPL27	chr17	42993419	43007959
RPL28_chr19_55380932_55397085	0/0	t0001	3794	103	3	23	59	6	12	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/1	t0002	3794	39	1	6	1	5	25	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0003	3798	24	5	5	14	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0004	3794	19	4	4	9	1	1	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0005	3798	18	6	1	9	1	1	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0006	3794	14	12	2	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0007	3800	10	10	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0008	3794	7	6	1	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0009	3797	6	6	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0010	3794	5	3	2	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0011	3794	5	5	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0012	3798	5	0	4	0	1	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0013	3798	5	4	0	1	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0014	3794	4	2	1	1	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0015	3797	3	3	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0016	3794	3	1	1	0	0	1	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0017	3794	2	2	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0018	3794	2	2	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0019	3794	2	0	2	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0020	3794	2	0	0	0	0	2	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0021	3794	2	0	2	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0022	3794	2	0	2	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0023	3794	2	2	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085