JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL28_chr19_55380932_55397085	0/0	t0024	3798	2	2	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0025	3797	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0026	3797	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0027	3798	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0028	3794	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0029	3798	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0030	3799	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0031	3800	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0032	3798	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0033	3798	1	0	0	1	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0034	3794	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	1/0	t0035	3796	1	0	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0036	3794	1	0	0	1	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0037	3794	1	0	0	1	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0038	3794	1	0	0	1	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0039	3816	1	0	0	1	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0040	3794	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0041	3794	1	0	0	0	0	1	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0042	3794	1	0	0	0	0	1	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0043	3794	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0044	3797	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0045	3794	1	0	1	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0046	3794	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0047	3797	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0048	3794	1	0	1	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0049	3794	1	0	1	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0050	3798	1	0	0	1	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0051	3794	1	0	1	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	t0052	3794	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL29_chr3_51988522_52000895	0/1	t0001	275	306	76	57	127	10	35	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	t0002	275	6	6	0	0	0	0	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	t0003	275	4	0	0	3	0	1	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	t0004	275	1	0	0	1	0	0	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	t0005	275	1	0	0	1	0	0	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	t0006	275	1	1	0	0	0	0	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	t0007	275	1	0	1	0	0	0	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	t0008	275	1	1	0	0	0	0	copy fasta	RPL29	chr3	51988522	52000895
RPL30_chr8_98036721_98050545	1/1	t0001	151	428	78	70	212	18	48	copy fasta	RPL30	chr8	98036721	98050545
RPL30_chr8_98036721_98050545	0/0	t0002	151	9	9	0	0	0	0	copy fasta	RPL30	chr8	98036721	98050545
RPL30_chr8_98036721_98050545	0/0	t0003	150	7	6	0	0	0	1	copy fasta	RPL30	chr8	98036721	98050545
RPL30_chr8_98036721_98050545	0/0	t0004	151	3	3	0	0	0	0	copy fasta	RPL30	chr8	98036721	98050545
RPL30_chr8_98036721_98050545	0/0	t0005	151	1	0	0	0	0	1	copy fasta	RPL30	chr8	98036721	98050545
RPL31_chr2_100997289_101012267	1/1	t0001	914	361	66	54	192	10	37	copy fasta	RPL31	chr2	100997289	101012267
RPL31_chr2_100997289_101012267	0/0	t0002	914	35	2	13	13	4	3	copy fasta	RPL31	chr2	100997289	101012267
RPL31_chr2_100997289_101012267	0/0	t0003	918	16	15	1	0	0	0	copy fasta	RPL31	chr2	100997289	101012267
RPL31_chr2_100997289_101012267	0/0	t0004	914	10	9	1	0	0	0	copy fasta	RPL31	chr2	100997289	101012267
RPL31_chr2_100997289_101012267	0/0	t0005	914	8	0	2	1	3	2	copy fasta	RPL31	chr2	100997289	101012267
RPL31_chr2_100997289_101012267	0/0	t0006	914	5	0	1	1	1	2	copy fasta	RPL31	chr2	100997289	101012267
RPL31_chr2_100997289_101012267	0/0	t0007	914	4	0	0	4	0	0	copy fasta	RPL31	chr2	100997289	101012267
RPL31_chr2_100997289_101012267	0/0	t0008	914	1	0	0	1	0	0	copy fasta	RPL31	chr2	100997289	101012267