JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL32_chr3_12829485_12846565	1/1	t0001	1687	287	52	55	140	10	28	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0002	1687	54	19	5	18	2	10	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0003	1687	18	0	4	14	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0004	1687	11	10	1	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0005	1687	8	0	0	8	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0006	1687	6	6	0	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0007	1687	4	3	1	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0008	1687	3	3	0	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0009	1687	3	3	0	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0010	1687	2	0	0	2	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0011	1687	1	0	1	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0012	1687	1	0	1	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0013	1687	1	0	1	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0014	1687	1	0	0	0	0	1	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0015	1687	1	0	0	0	0	1	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0016	1687	1	0	0	0	0	1	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0017	1687	1	0	1	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0018	1687	1	0	0	0	0	1	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0019	1687	1	1	0	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	t0020	1687	1	1	0	0	0	0	copy fasta	RPL32	chr3	12829485	12846565
RPL34_chr4_108615576_108630370	1/1	t0001	193	377	88	73	164	16	34	copy fasta	RPL34	chr4	108615576	108630370
RPL34_chr4_108615576_108630370	0/0	t0002	192	6	5	1	0	0	0	copy fasta	RPL34	chr4	108615576	108630370
RPL34_chr4_108615576_108630370	0/0	t0003	193	4	4	0	0	0	0	copy fasta	RPL34	chr4	108615576	108630370
RPL34_chr4_108615576_108630370	0/0	t0004	193	2	0	0	0	0	2	copy fasta	RPL34	chr4	108615576	108630370
RPL34_chr4_108615576_108630370	0/0	t0005	193	2	1	1	0	0	0	copy fasta	RPL34	chr4	108615576	108630370
RPL34_chr4_108615576_108630370	0/0	t0006	193	1	0	1	0	0	0	copy fasta	RPL34	chr4	108615576	108630370
RPL35A_chr3_197945190_197961610	1/1	t0001	902	214	7	47	125	9	24	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0002	900	87	44	12	13	4	14	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0003	900	33	16	2	11	0	4	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0004	900	12	12	0	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0005	900	3	3	0	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0006	902	3	3	0	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0007	902	2	0	0	2	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0008	900	2	0	0	2	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0009	902	2	0	2	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0010	900	2	2	0	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0011	902	2	0	0	2	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0012	902	2	0	0	2	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0013	900	1	1	0	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0014	902	1	0	0	1	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0015	900	1	1	0	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0016	900	1	0	0	1	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0017	902	1	0	0	0	1	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0018	902	1	0	1	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0019	900	1	1	0	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0020	900	1	0	1	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0021	902	1	0	0	1	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	t0022	902	1	0	1	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35_chr9_124852883_124866957	0/0	t0001	81	402	89	76	183	14	40	copy fasta	RPL35	chr9	124852883	124866957
RPL35_chr9_124852883_124866957	0/0	t0002	81	2	2	0	0	0	0	copy fasta	RPL35	chr9	124852883	124866957