JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL35_chr9_124852883_124866957	0/0	t0003	81	1	1	0	0	0	0	copy fasta	RPL35	chr9	124852883	124866957
RPL35_chr9_124852883_124866957	0/0	t0004	81	1	1	0	0	0	0	copy fasta	RPL35	chr9	124852883	124866957
RPL35_chr9_124852883_124866957	0/0	t0005	81	1	1	0	0	0	0	copy fasta	RPL35	chr9	124852883	124866957
RPL35_chr9_124852883_124866957	0/0	t0006	81	1	0	0	1	0	0	copy fasta	RPL35	chr9	124852883	124866957
RPL36AL_chr14_49613530_49625626	1/0	t0001	356	185	27	20	109	7	21	copy fasta	RPL36AL	chr14	49613530	49625626
RPL36AL_chr14_49613530_49625626	0/1	t0002	356	113	36	34	22	6	14	copy fasta	RPL36AL	chr14	49613530	49625626
RPL36AL_chr14_49613530_49625626	0/0	t0003	356	43	22	14	1	3	3	copy fasta	RPL36AL	chr14	49613530	49625626
RPL36AL_chr14_49613530_49625626	0/0	t0004	356	9	9	0	0	0	0	copy fasta	RPL36AL	chr14	49613530	49625626
RPL36AL_chr14_49613530_49625626	0/0	t0005	338	4	0	0	4	0	0	copy fasta	RPL36AL	chr14	49613530	49625626
RPL36A_chrX_101386011_101401155	1/1	t0001	441	276	63	47	129	11	24	copy fasta	RPL36A	chrX	101386011	101401155
RPL36A_chrX_101386011_101401155	0/0	t0002	436	38	12	7	14	0	5	copy fasta	RPL36A	chrX	101386011	101401155
RPL36A_chrX_101386011_101401155	0/0	t0003	441	1	1	0	0	0	0	copy fasta	RPL36A	chrX	101386011	101401155
RPL36A_chrX_101386011_101401155	0/0	t0004	441	1	1	0	0	0	0	copy fasta	RPL36A	chrX	101386011	101401155
RPL36A_chrX_101386011_101401155	0/0	t0005	438	1	1	0	0	0	0	copy fasta	RPL36A	chrX	101386011	101401155
RPL36_chr19_5685295_5696875	1/1	t0001	290	387	85	82	160	13	45	copy fasta	RPL36	chr19	5685295	5696875
RPL36_chr19_5685295_5696875	0/0	t0002	290	2	2	0	0	0	0	copy fasta	RPL36	chr19	5685295	5696875
RPL36_chr19_5685295_5696875	0/0	t0003	290	1	0	0	0	1	0	copy fasta	RPL36	chr19	5685295	5696875
RPL36_chr19_5685295_5696875	0/0	t0004	290	1	0	1	0	0	0	copy fasta	RPL36	chr19	5685295	5696875
RPL36_chr19_5685295_5696875	0/0	t0005	290	1	0	0	0	0	1	copy fasta	RPL36	chr19	5685295	5696875
RPL36_chr19_5685295_5696875	0/0	t0006	290	1	0	1	0	0	0	copy fasta	RPL36	chr19	5685295	5696875
RPL36_chr19_5685295_5696875	0/0	t0007	290	1	1	0	0	0	0	copy fasta	RPL36	chr19	5685295	5696875
RPL37A_chr2_216493844_216509086	1/0	t0001	2714	119	39	21	49	2	7	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0002	2714	94	9	22	40	5	18	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/1	t0003	2714	90	1	15	57	7	9	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0004	2712	40	3	2	32	1	2	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0005	2714	17	5	6	0	1	5	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0006	2714	12	6	5	0	0	1	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0007	2714	9	9	0	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0008	2714	8	8	0	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0009	2715	7	0	1	6	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0010	2707	7	0	0	7	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0011	2714	5	0	0	5	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0012	2714	4	4	0	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0013	2714	3	0	0	0	0	3	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0014	2714	3	3	0	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0015	2714	2	2	0	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0016	2714	2	0	2	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0017	2714	2	0	0	2	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0018	2714	1	1	0	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0019	2714	1	1	0	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0020	2714	1	0	0	0	0	1	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0021	2714	1	0	0	1	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0022	2714	1	0	0	1	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0023	2714	1	1	0	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0024	2714	1	0	0	1	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0025	2714	1	1	0	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0026	2714	1	0	0	1	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0027	2714	1	0	0	1	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0028	2714	1	0	0	1	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0029	2714	1	0	0	1	0	0	copy fasta	RPL37A	chr2	216493844	216509086