JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL37A_chr2_216493844_216509086	0/0	t0030	2714	1	0	0	1	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0031	2714	1	0	0	1	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0032	2712	1	0	0	1	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	t0033	2712	1	1	0	0	0	0	copy fasta	RPL37A	chr2	216493844	216509086
RPL37_chr5_40820262_40840222	0/0	t0001	7284	60	1	12	36	3	8	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0002	7286	55	3	9	38	4	1	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/1	t0003	7286	55	12	9	30	1	2	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0004	7278	35	0	2	26	0	7	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0005	7284	14	0	2	9	0	3	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0006	7278	12	2	3	0	3	4	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0007	7278	10	10	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0008	7255	9	0	0	9	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0009	7280	9	0	4	0	2	3	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0010	7288	8	3	0	5	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0011	7286	8	1	2	1	1	3	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0012	7286	7	0	0	7	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0013	7280	7	1	5	0	1	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0014	7282	7	4	3	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0015	7285	6	0	4	2	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0016	7286	5	0	3	0	0	2	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0017	7285	5	3	0	2	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0018	7285	5	0	0	4	0	1	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0019	7285	5	0	0	5	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0020	7286	4	4	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0021	7290	4	1	3	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0022	7277	4	4	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0023	7286	3	2	1	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0024	7279	3	3	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0025	7280	3	0	0	3	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0026	7286	3	0	0	3	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0027	7288	3	1	0	2	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0028	7286	3	3	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0029	7284	2	0	1	1	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0030	7282	2	2	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0031	7278	2	1	1	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0032	7280	2	1	1	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	1/0	t0033	7280	2	0	0	1	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0034	7286	2	2	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0035	7280	2	2	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0036	7275	2	2	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0037	7286	2	0	0	2	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0038	7284	2	0	1	0	0	1	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0039	7284	2	2	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0040	7284	2	2	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0041	7284	2	0	0	0	0	2	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0042	7284	1	0	0	1	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0043	7278	1	1	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0044	7282	1	1	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0045	7280	1	1	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0046	7286	1	0	0	1	0	0	copy fasta	RPL37	chr5	40820262	40840222