Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B4GALNT3_chr12_454939_568509	0/0	t0017	2497	5	5	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0018	2497	4	0	0	4	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0019	2497	4	0	2	2	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0020	2497	4	3	0	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0021	2496	3	0	0	3	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0022	2497	3	3	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0023	2497	3	0	0	2	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0024	2497	3	0	1	1	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0025	2497	3	0	0	3	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0026	2497	3	0	1	2	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0027	2497	3	3	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0028	2496	2	2	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0029	2497	2	1	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0030	2496	2	0	1	0	1	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0031	2497	2	2	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0032	2497	2	0	2	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0033	2497	2	1	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0034	2497	2	0	0	2	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0035	2497	2	0	0	2	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0036	2497	2	0	1	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0037	2497	2	1	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0038	2497	2	2	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0039	2497	2	2	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0040	2497	1	0	0	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0041	2496	1	0	0	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0042	2496	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0043	2497	1	0	0	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0044	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0045	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0046	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0047	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0048	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0049	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0050	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0051	2496	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0052	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0053	2497	1	0	0	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0054	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0055	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0056	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0057	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0058	2497	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0059	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0060	2496	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0061	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0062	2497	1	0	0	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0063	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0064	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0065	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0066	2497	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509