JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL37_chr5_40820262_40840222	0/0	t0097	7284	1	0	0	1	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0098	7285	1	0	0	0	0	1	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0099	7284	1	0	0	0	0	1	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0100	7283	1	0	0	0	0	1	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0101	7286	1	0	1	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0102	7286	1	0	0	0	0	1	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	t0103	7278	1	0	0	0	0	1	copy fasta	RPL37	chr5	40820262	40840222
RPL38_chr17_74198678_74215655	1/1	t0001	933	162	8	50	72	5	25	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0002	932	56	13	9	17	8	9	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0003	931	43	0	4	29	0	10	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0004	935	34	0	2	31	1	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0005	934	28	25	2	0	0	1	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0006	932	22	8	1	13	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0007	933	17	13	2	1	1	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0008	934	15	0	1	14	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0009	933	10	0	0	10	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0010	935	9	8	1	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0011	933	7	7	0	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0012	933	5	0	0	5	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0013	933	4	3	1	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0014	933	4	1	1	1	1	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0015	933	3	2	1	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0016	933	3	0	0	0	0	3	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0017	933	3	0	3	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0018	934	2	2	0	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0019	933	2	0	0	0	2	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0020	933	2	2	0	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0021	935	2	1	1	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0022	934	1	1	0	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0023	935	1	1	0	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0024	933	1	0	0	1	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0025	933	1	0	0	1	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0026	933	1	0	1	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0027	933	1	0	0	1	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0028	935	1	0	0	1	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0029	935	1	1	0	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0030	931	1	1	0	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0031	932	1	1	0	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0032	933	1	0	1	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0033	933	1	0	0	1	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	t0034	933	1	0	1	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL39L_chr3_187115948_187144496	1/1	t0001	574	342	61	65	161	16	37	copy fasta	RPL39L	chr3	187115948	187144496
RPL39L_chr3_187115948_187144496	0/0	t0002	574	15	10	1	0	0	4	copy fasta	RPL39L	chr3	187115948	187144496
RPL39L_chr3_187115948_187144496	0/0	t0003	572	14	10	4	0	0	0	copy fasta	RPL39L	chr3	187115948	187144496
RPL39L_chr3_187115948_187144496	0/0	t0004	574	11	7	4	0	0	0	copy fasta	RPL39L	chr3	187115948	187144496
RPL39L_chr3_187115948_187144496	0/0	t0005	573	10	0	0	9	0	1	copy fasta	RPL39L	chr3	187115948	187144496
RPL39L_chr3_187115948_187144496	0/0	t0006	574	3	3	0	0	0	0	copy fasta	RPL39L	chr3	187115948	187144496
RPL39L_chr3_187115948_187144496	0/0	t0007	574	2	2	0	0	0	0	copy fasta	RPL39L	chr3	187115948	187144496
RPL39L_chr3_187115948_187144496	0/0	t0008	574	1	0	1	0	0	0	copy fasta	RPL39L	chr3	187115948	187144496
RPL39L_chr3_187115948_187144496	0/0	t0009	574	1	0	1	0	0	0	copy fasta	RPL39L	chr3	187115948	187144496