JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL39L_chr3_187115948_187144496	0/0	t0010	574	1	1	0	0	0	0	copy fasta	RPL39L	chr3	187115948	187144496
RPL39_chrX_119781504_119796630	0/0	t0001	235	314	77	54	142	11	30	copy fasta	RPL39	chrX	119781504	119796630
RPL39_chrX_119781504_119796630	0/0	t0002	235	3	3	0	0	0	0	copy fasta	RPL39	chrX	119781504	119796630
RPL39_chrX_119781504_119796630	0/0	t0003	235	2	0	2	0	0	0	copy fasta	RPL39	chrX	119781504	119796630
RPL39_chrX_119781504_119796630	0/0	t0004	235	1	0	0	1	0	0	copy fasta	RPL39	chrX	119781504	119796630
RPL3L_chr16_1938974_1959689	0/0	t0001	922	204	26	28	121	2	27	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	1/1	t0002	922	146	34	44	48	9	9	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0003	921	17	5	1	9	0	2	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0004	923	12	3	2	5	1	1	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0005	923	11	2	4	2	1	2	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0006	923	10	10	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0007	922	10	0	1	9	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0008	921	8	0	2	3	2	1	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0009	923	3	0	0	0	0	3	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0010	922	3	0	0	3	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0011	922	3	1	0	0	0	2	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0012	923	2	2	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0013	922	2	2	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0014	921	2	0	0	2	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0015	923	2	2	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0016	922	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0017	922	1	0	0	0	1	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0018	922	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0019	922	1	0	0	0	0	1	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0020	922	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0021	922	1	0	1	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0022	922	1	0	0	1	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0023	922	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0024	922	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0025	923	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0026	923	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0027	922	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0028	922	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0029	923	1	0	0	1	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	t0030	922	1	0	1	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3_chr22_39307882_39324623	1/1	t0001	85	372	95	81	133	15	46	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	t0002	85	3	3	0	0	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	t0003	85	2	0	0	0	0	2	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	t0004	85	2	0	0	2	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	t0005	85	1	0	0	0	1	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	t0006	85	1	0	0	1	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	t0007	85	1	0	1	0	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL41_chr12_56111633_56122967	1/1	t0001	599	325	88	69	118	14	34	copy fasta	RPL41	chr12	56111633	56122967
RPL41_chr12_56111633_56122967	0/0	t0002	599	17	0	1	16	0	0	copy fasta	RPL41	chr12	56111633	56122967
RPL41_chr12_56111633_56122967	0/0	t0003	598	7	0	0	7	0	0	copy fasta	RPL41	chr12	56111633	56122967
RPL41_chr12_56111633_56122967	0/0	t0004	599	2	0	0	0	2	0	copy fasta	RPL41	chr12	56111633	56122967
RPL41_chr12_56111633_56122967	0/0	t0005	598	1	0	0	1	0	0	copy fasta	RPL41	chr12	56111633	56122967
RPL4_chr15_66493015_66509855	1/1	t0001	1458	114	14	26	46	9	17	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0002	1458	109	10	27	56	2	14	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0003	1458	68	6	6	49	3	4	copy fasta	RPL4	chr15	66493015	66509855