JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL4_chr15_66493015_66509855	0/0	t0004	1458	37	5	9	23	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0005	1456	28	10	4	9	1	4	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0006	1458	24	23	1	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0007	1458	8	1	2	0	3	2	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0008	1458	7	5	2	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0009	1458	4	4	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0010	1458	4	4	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0011	1458	3	1	0	0	0	2	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0012	1458	3	3	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0013	1458	3	3	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0014	1458	2	2	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0015	1458	2	0	2	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0016	1458	2	0	0	0	0	2	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0017	1458	1	0	1	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0018	1458	1	0	0	1	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0019	1458	1	0	0	1	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0020	1458	1	1	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0021	1458	1	1	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0022	1458	1	0	0	0	0	1	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0023	1458	1	0	0	1	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0024	1456	1	0	0	1	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0025	1458	1	1	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	t0026	1458	1	0	0	1	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL5_chr1_92827040_92846924	1/0	t0001	135	322	88	62	110	18	43	copy fasta	RPL5	chr1	92827040	92846924
RPL5_chr1_92827040_92846924	0/0	t0002	135	4	4	0	0	0	0	copy fasta	RPL5	chr1	92827040	92846924
RPL5_chr1_92827040_92846924	0/0	t0003	135	4	4	0	0	0	0	copy fasta	RPL5	chr1	92827040	92846924
RPL5_chr1_92827040_92846924	0/0	t0004	135	1	0	0	0	0	1	copy fasta	RPL5	chr1	92827040	92846924
RPL6_chr12_112400189_112414605	1/1	t0001	55	406	94	72	180	12	46	copy fasta	RPL6	chr12	112400189	112414605
RPL7A_chr9_133343218_133356426	1/1	t0001	87	431	93	76	196	18	46	copy fasta	RPL7A	chr9	133343218	133356426
RPL7A_chr9_133343218_133356426	0/0	t0002	87	5	5	0	0	0	0	copy fasta	RPL7A	chr9	133343218	133356426
RPL7L1_chr6_42874616_42894900	0/1	t0001	3732	214	20	42	117	12	22	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0002	3734	49	8	12	16	1	12	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0003	3730	37	12	12	4	4	5	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0004	3733	15	14	1	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0005	3733	11	1	3	5	0	2	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0006	3733	6	1	0	5	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0007	3735	4	1	0	3	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0008	3732	4	2	2	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0009	3734	4	4	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0010	3731	4	0	1	2	0	1	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0011	3732	4	1	2	0	0	1	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0012	3734	3	3	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0013	3735	3	3	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0014	3734	2	2	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0015	3734	2	2	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0016	3732	2	2	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0017	3732	2	2	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0018	3734	2	2	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0019	3733	2	2	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0020	3731	2	2	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900