JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPL7L1_chr6_42874616_42894900	0/0	t0021	3735	1	1	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0022	3735	1	1	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0023	3733	1	1	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0024	3734	1	0	0	1	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0025	3730	1	0	1	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0026	3731	1	0	0	1	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0027	3731	1	1	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0028	3730	1	0	0	1	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0029	3734	1	1	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0030	3735	1	1	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0031	3732	1	1	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0032	3732	1	0	0	1	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0033	3732	1	0	0	1	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0034	3732	1	0	0	0	1	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0035	3732	1	0	1	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0036	3732	1	0	1	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0037	3729	1	0	0	0	0	1	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	1/0	t0038	3732	1	0	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0039	3732	1	0	1	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0040	3732	1	0	0	1	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0041	3734	1	1	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0042	3733	1	1	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0043	3733	1	0	1	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0044	3731	1	0	1	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0045	3732	1	0	1	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	t0046	3733	1	1	0	0	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7_chr8_73285242_73298633	1/1	t0001	486	396	79	64	196	18	37	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	t0002	486	32	9	6	15	0	2	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	t0003	486	7	0	5	2	0	0	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	t0004	486	5	5	0	0	0	0	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	t0005	486	3	3	0	0	0	0	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	t0006	486	2	0	0	0	0	2	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	t0007	486	1	0	0	1	0	0	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	t0008	486	1	0	0	0	0	1	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	t0009	486	1	0	1	0	0	0	copy fasta	RPL7	chr8	73285242	73298633
RPL8_chr8_144784769_144797390	1/1	t0001	297	385	79	75	178	18	33	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	t0002	297	10	10	0	0	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	t0003	297	9	0	5	3	0	1	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	t0004	297	5	4	1	0	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	t0005	297	2	0	2	0	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	t0006	297	1	0	0	1	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	t0007	297	1	0	1	0	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	t0008	297	1	1	0	0	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL9_chr4_39449124_39463922	0/0	t0001	145	425	90	76	205	14	40	copy fasta	RPL9	chr4	39449124	39463922
RPL9_chr4_39449124_39463922	0/0	t0002	146	21	4	4	9	0	4	copy fasta	RPL9	chr4	39449124	39463922
RPLP0_chr12_120191699_120206111	1/1	t0001	152	366	90	63	164	13	34	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	t0002	152	4	0	1	0	1	2	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	t0003	152	1	0	0	1	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	t0004	152	1	0	0	1	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP1_chr15_69447818_69461205	0/1	t0001	829	271	40	57	125	16	32	copy fasta	RPLP1	chr15	69447818	69461205