JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPLP1_chr15_69447818_69461205	1/0	t0002	830	133	41	9	79	0	3	copy fasta	RPLP1	chr15	69447818	69461205
RPLP1_chr15_69447818_69461205	0/0	t0003	830	7	7	0	0	0	0	copy fasta	RPLP1	chr15	69447818	69461205
RPLP1_chr15_69447818_69461205	0/0	t0004	829	3	3	0	0	0	0	copy fasta	RPLP1	chr15	69447818	69461205
RPLP1_chr15_69447818_69461205	0/0	t0005	829	2	0	0	2	0	0	copy fasta	RPLP1	chr15	69447818	69461205
RPLP1_chr15_69447818_69461205	0/0	t0006	829	2	0	2	0	0	0	copy fasta	RPLP1	chr15	69447818	69461205
RPLP1_chr15_69447818_69461205	0/0	t0007	830	1	1	0	0	0	0	copy fasta	RPLP1	chr15	69447818	69461205
RPLP1_chr15_69447818_69461205	0/0	t0008	830	1	0	0	1	0	0	copy fasta	RPLP1	chr15	69447818	69461205
RPLP1_chr15_69447818_69461205	0/0	t0009	829	1	0	0	0	0	1	copy fasta	RPLP1	chr15	69447818	69461205
RPLP1_chr15_69447818_69461205	0/0	t0010	830	1	0	0	1	0	0	copy fasta	RPLP1	chr15	69447818	69461205
RPLP2_chr11_804967_817876	1/1	t0001	114	306	80	57	129	11	27	copy fasta	RPLP2	chr11	804967	817876
RPLP2_chr11_804967_817876	0/0	t0002	105	111	8	24	53	5	21	copy fasta	RPLP2	chr11	804967	817876
RPLP2_chr11_804967_817876	0/0	t0003	114	11	10	1	0	0	0	copy fasta	RPLP2	chr11	804967	817876
RPN1_chr3_128614969_128655818	0/0	t0001	463	97	11	17	54	2	13	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	1/0	t0002	461	91	16	20	28	8	18	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/1	t0003	461	88	14	17	47	0	9	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0004	460	13	2	2	7	2	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0005	460	13	4	5	2	1	1	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0006	462	11	7	3	0	0	1	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0007	463	9	8	1	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0008	461	8	6	2	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0009	462	8	5	1	1	0	1	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0010	461	6	0	1	3	0	2	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0011	461	6	4	0	2	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0012	462	5	0	0	5	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0013	463	4	4	0	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0014	461	3	1	0	2	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0015	461	3	1	1	0	1	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0016	460	2	2	0	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0017	462	2	2	0	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0018	460	2	0	2	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0019	460	2	1	0	0	1	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0020	461	2	2	0	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0021	461	2	1	1	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0022	462	2	0	1	0	0	1	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0023	460	2	0	0	1	1	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0024	462	2	0	0	2	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0025	460	1	0	1	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0026	460	1	0	1	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0027	462	1	1	0	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0028	463	1	0	0	1	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	t0029	461	1	0	0	1	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN2_chr20_37174330_37246619	1/1	t0001	332	345	78	64	150	11	40	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	t0002	332	1	0	0	0	1	0	copy fasta	RPN2	chr20	37174330	37246619
RPP14_chr3_58301245_58325193	0/0	t0001	2892	128	48	29	38	3	10	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0002	2895	85	1	8	59	0	17	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	1/1	t0003	2892	43	14	19	0	1	7	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0004	2896	29	0	7	22	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0005	2894	10	10	0	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0006	2891	10	2	3	0	3	2	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0007	2896	10	0	0	7	0	3	copy fasta	RPP14	chr3	58301245	58325193