JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPP14_chr3_58301245_58325193	0/0	t0008	2893	7	4	1	2	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0009	2892	5	4	1	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0010	2895	5	0	5	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0011	2891	4	1	0	2	1	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0012	2897	4	0	1	3	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0013	2890	2	2	0	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0014	2889	2	2	0	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0015	2893	2	1	0	0	0	1	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0016	2892	2	0	0	0	2	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0017	2891	2	0	2	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0018	2894	2	0	0	1	0	1	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0019	2892	1	1	0	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0020	2893	1	1	0	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0021	2895	1	1	0	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0022	2892	1	0	0	0	0	1	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0023	2892	1	0	0	1	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0024	2892	1	0	0	0	0	1	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0025	2891	1	0	0	1	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0026	2892	1	1	0	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0027	2891	1	1	0	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0028	2898	1	0	0	1	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0029	2896	1	0	0	1	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0030	2896	1	0	1	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0031	2895	1	0	0	0	0	1	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0032	2896	1	0	1	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0033	2894	1	0	1	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0034	2894	1	0	0	1	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0035	2896	1	0	1	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	t0036	2896	1	0	0	1	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP21_chr6_30340156_30351857	0/1	t0001	64	287	67	51	118	13	37	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/0	t0002	64	109	0	19	79	2	9	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/0	t0003	64	71	25	14	27	3	2	copy fasta	RPP21	chr6	30340156	30351857
RPP25L_chr9_34605495_34617097	1/1	t0001	381	352	77	71	159	10	33	copy fasta	RPP25L	chr9	34605495	34617097
RPP25L_chr9_34605495_34617097	0/0	t0002	381	36	8	2	26	0	0	copy fasta	RPP25L	chr9	34605495	34617097
RPP25L_chr9_34605495_34617097	0/0	t0003	381	15	0	4	1	4	6	copy fasta	RPP25L	chr9	34605495	34617097
RPP25L_chr9_34605495_34617097	0/0	t0004	381	8	7	1	0	0	0	copy fasta	RPP25L	chr9	34605495	34617097
RPP25L_chr9_34605495_34617097	0/0	t0005	381	5	0	0	2	0	3	copy fasta	RPP25L	chr9	34605495	34617097
RPP25L_chr9_34605495_34617097	0/0	t0006	381	4	0	0	4	0	0	copy fasta	RPP25L	chr9	34605495	34617097
RPP25L_chr9_34605495_34617097	0/0	t0007	381	2	0	0	0	2	0	copy fasta	RPP25L	chr9	34605495	34617097
RPP25L_chr9_34605495_34617097	0/0	t0008	381	1	1	0	0	0	0	copy fasta	RPP25L	chr9	34605495	34617097
RPP25L_chr9_34605495_34617097	0/0	t0009	381	1	1	0	0	0	0	copy fasta	RPP25L	chr9	34605495	34617097
RPP25_chr15_74949418_74961772	1/1	t0001	1756	316	77	35	163	9	30	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	t0002	1756	93	13	35	29	9	7	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	t0003	1754	3	0	0	3	0	0	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	t0004	1756	2	0	2	0	0	0	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	t0005	1756	1	1	0	0	0	0	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	t0006	1756	1	0	1	0	0	0	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	t0007	1756	1	1	0	0	0	0	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	t0008	1756	1	0	0	1	0	0	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	t0009	1756	1	0	0	0	0	1	copy fasta	RPP25	chr15	74949418	74961772