JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPP25_chr15_74949418_74961772	0/0	t0010	1756	1	0	0	1	0	0	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	t0011	1756	1	0	1	0	0	0	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	t0012	1756	1	0	0	1	0	0	copy fasta	RPP25	chr15	74949418	74961772
RPP30_chr10_90866974_90907191	1/1	t0001	1526	156	9	36	86	4	19	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0002	1524	109	45	19	40	1	4	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0003	1527	54	12	7	25	4	6	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0004	1527	54	7	7	33	1	6	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0005	1524	12	1	4	0	3	4	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0006	1523	7	5	0	1	1	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0007	1525	6	1	1	3	0	1	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0008	1528	5	1	2	1	0	1	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0009	1527	5	5	0	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0010	1528	5	1	0	4	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0011	1526	4	0	0	4	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0012	1527	4	1	0	3	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0013	1525	3	0	0	3	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0014	1526	2	1	0	0	0	1	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0015	1527	2	1	0	1	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0016	1524	2	2	0	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0017	1525	1	1	0	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0018	1524	1	1	0	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0019	1524	1	1	0	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0020	1527	1	0	0	1	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0021	1526	1	0	0	1	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0022	1526	1	1	0	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0023	1526	1	0	0	1	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0024	1524	1	1	0	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0025	1526	1	0	0	1	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	t0026	1523	1	1	0	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP38_chr10_15092355_15109257	1/1	t0001	633	236	14	51	133	9	27	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0002	633	58	37	2	18	0	1	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0003	633	40	33	5	0	2	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0004	633	33	7	10	8	2	6	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0005	633	5	0	3	0	1	1	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0006	633	3	0	0	3	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0007	633	1	0	0	0	0	1	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0008	633	1	0	0	1	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0009	633	1	0	1	0	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0010	633	1	1	0	0	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0011	633	1	1	0	0	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0012	633	1	0	0	1	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	t0013	633	1	1	0	0	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP40_chr6_4989717_5009037	0/0	t0001	397	202	33	43	97	7	22	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	t0002	397	85	25	24	26	5	5	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	1/1	t0003	397	40	15	11	1	1	10	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	t0004	397	11	4	2	4	0	1	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	t0005	405	10	9	1	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	t0006	397	4	4	0	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	t0007	397	3	0	2	0	1	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	t0008	400	3	3	0	0	0	0	copy fasta	RPP40	chr6	4989717	5009037