JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPP40_chr6_4989717_5009037	0/0	t0009	397	1	0	1	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	t0010	397	1	1	0	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPRD1A_chr18_35984824_36072559	1/1	t0001	3483	163	42	46	55	3	15	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0002	3483	67	1	7	45	2	12	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0003	3483	26	20	2	0	1	3	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0004	3483	21	0	0	19	0	2	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0005	3483	6	6	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0006	3483	4	4	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0007	3483	4	0	0	4	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0008	3483	3	3	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0009	3483	3	3	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0010	3483	3	3	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0011	3483	3	0	0	3	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0012	3483	2	0	0	0	0	2	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0013	3483	2	2	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0014	3483	2	2	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0015	3483	1	1	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0016	3483	1	0	0	1	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0017	3483	1	1	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0018	3483	1	1	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0019	3483	1	0	1	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0020	3483	1	0	0	1	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0021	3483	1	1	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0022	3483	1	1	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	t0023	3483	1	1	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1B_chr20_38028746_38097364	1/1	t0001	2692	188	50	29	84	8	15	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0002	2692	83	29	15	32	0	7	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0003	2696	55	6	8	28	4	9	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0004	2692	35	1	2	31	0	1	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0005	2692	3	1	0	0	0	2	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0006	2692	3	0	0	3	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0007	2692	2	2	0	0	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0008	2692	2	0	0	2	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0009	2692	1	1	0	0	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0010	2692	1	0	0	1	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0011	2692	1	0	0	1	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0012	2692	1	0	1	0	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0013	2692	1	1	0	0	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0014	2692	1	1	0	0	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0015	2696	1	0	0	1	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0016	2692	1	0	0	1	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0017	2692	1	0	1	0	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0018	2692	1	0	0	1	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0019	2692	1	1	0	0	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0020	2692	1	1	0	0	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	t0021	2692	1	0	0	1	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD2_chr1_150359147_150481566	0/0	t0001	3801	107	11	14	63	5	14	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	t0002	3800	34	2	4	25	0	3	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	t0003	3799	27	8	6	13	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	t0004	3801	17	0	3	3	1	10	copy fasta	RPRD2	chr1	150359147	150481566