Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B4GALNT3_chr12_454939_568509	0/0	t0067	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0068	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0069	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0070	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0071	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0072	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0073	2497	1	0	0	0	1	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0074	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0075	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0076	2496	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0077	2497	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0078	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0079	2496	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0080	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0081	2497	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0082	2497	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0083	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0084	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0085	2496	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0086	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0087	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0088	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0089	2497	1	0	0	0	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0090	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0091	2497	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0092	2497	1	1	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0093	2497	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0094	2497	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0095	2497	1	0	0	1	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	t0096	2497	1	0	1	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT4_chr11_364499_387117	1/1	t0001	631	148	29	42	48	6	21	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	t0002	638	17	4	9	0	2	2	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	t0003	631	7	4	2	0	0	1	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	t0004	638	7	7	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	t0005	631	3	3	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	t0006	631	1	0	1	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALNT4_chr11_364499_387117	0/0	t0007	631	1	1	0	0	0	0	copy fasta	B4GALNT4	chr11	364499	387117
B4GALT1_chr9_33105642_33172336	0/0	t0001	2976	87	7	26	33	5	16	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0002	2977	59	14	5	23	4	13	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0003	2971	32	0	7	21	0	4	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0004	2980	16	7	8	0	1	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0005	2978	14	2	2	9	0	1	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0006	2981	12	5	1	6	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0007	2980	11	8	1	1	0	1	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0008	2978	7	7	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0009	2980	7	6	1	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0010	2980	6	1	0	5	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0011	2978	6	0	0	5	0	1	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0012	2980	6	4	0	1	0	1	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0013	2977	6	0	0	5	1	0	copy fasta	B4GALT1	chr9	33105642	33172336