JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPRML_chr17_46973156_46984253	0/0	t0004	738	7	0	0	7	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	t0005	738	6	6	0	0	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	t0006	753	1	0	0	1	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	t0007	736	1	1	0	0	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	t0008	736	1	1	0	0	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	t0009	738	1	0	0	1	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	t0010	736	1	1	0	0	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRM_chr2_153472338_153483762	1/0	t0001	1096	248	52	38	132	3	22	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/1	t0002	1096	84	16	33	8	13	13	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	t0003	1096	47	8	6	28	0	5	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	t0004	1096	24	23	1	0	0	0	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	t0005	1096	1	1	0	0	0	0	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	t0006	1096	1	0	0	1	0	0	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	t0007	1096	1	0	0	0	0	1	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	t0008	1096	1	0	0	1	0	0	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	t0009	1096	1	0	0	0	0	1	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	t0010	1096	1	0	0	1	0	0	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	t0011	1096	1	0	0	1	0	0	copy fasta	RPRM	chr2	153472338	153483762
RPS10_chr6_34412454_34431069	0/1	t0001	91	209	38	40	87	16	27	copy fasta	RPS10	chr6	34412454	34431069
RPS10_chr6_34412454_34431069	1/0	t0002	91	169	53	32	68	2	13	copy fasta	RPS10	chr6	34412454	34431069
RPS10_chr6_34412454_34431069	0/0	t0003	91	7	1	0	6	0	0	copy fasta	RPS10	chr6	34412454	34431069
RPS10_chr6_34412454_34431069	0/0	t0004	91	2	0	0	1	0	1	copy fasta	RPS10	chr6	34412454	34431069
RPS10_chr6_34412454_34431069	0/0	t0005	91	2	0	0	1	0	1	copy fasta	RPS10	chr6	34412454	34431069
RPS10_chr6_34412454_34431069	0/0	t0006	91	1	0	0	1	0	0	copy fasta	RPS10	chr6	34412454	34431069
RPS11_chr19_49491434_49504708	0/0	t0001	97	352	96	66	136	12	42	copy fasta	RPS11	chr19	49491434	49504708
RPS12_chr6_132809569_132822564	0/0	t0001	105	203	68	41	71	3	20	copy fasta	RPS12	chr6	132809569	132822564
RPS12_chr6_132809569_132822564	1/1	t0002	105	184	22	32	99	11	18	copy fasta	RPS12	chr6	132809569	132822564
RPS12_chr6_132809569_132822564	0/0	t0003	105	3	2	1	0	0	0	copy fasta	RPS12	chr6	132809569	132822564
RPS12_chr6_132809569_132822564	0/0	t0004	105	2	0	0	2	0	0	copy fasta	RPS12	chr6	132809569	132822564
RPS13_chr11_17069388_17082667	1/1	t0001	72	387	81	70	184	10	40	copy fasta	RPS13	chr11	17069388	17082667
RPS13_chr11_17069388_17082667	0/0	t0002	72	12	0	12	0	0	0	copy fasta	RPS13	chr11	17069388	17082667
RPS13_chr11_17069388_17082667	0/0	t0003	72	9	9	0	0	0	0	copy fasta	RPS13	chr11	17069388	17082667
RPS14_chr5_150437635_150454739	1/1	t0001	1691	173	28	47	81	8	7	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0002	1679	69	4	12	39	3	11	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0003	1691	58	2	1	45	0	10	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0004	1691	16	0	4	9	0	3	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0005	1679	11	0	3	4	0	4	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0006	1688	10	10	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0007	1691	9	9	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0008	1689	9	9	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0009	1679	7	0	0	7	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0010	1689	6	4	2	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0011	1691	6	6	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0012	1691	5	0	0	5	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0013	1689	4	2	2	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0014	1688	4	4	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0015	1679	4	0	0	4	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0016	1691	3	3	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0017	1691	3	2	1	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0018	1672	2	2	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739