JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS14_chr5_150437635_150454739	0/0	t0019	1691	2	0	0	2	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0020	1691	1	0	1	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0021	1690	1	0	0	0	1	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0022	1688	1	1	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0023	1691	1	1	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0024	1688	1	1	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0025	1688	1	1	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0026	1691	1	0	0	1	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0027	1691	1	0	0	0	0	1	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0028	1679	1	0	0	0	0	1	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0029	1679	1	0	0	0	0	1	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0030	1679	1	0	0	1	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0031	1691	1	0	1	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	t0032	1691	1	1	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS15A_chr16_18776295_18795334	1/0	t0001	1811	165	36	28	80	7	13	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0002	1804	59	4	19	18	4	14	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0003	1812	26	9	2	10	0	5	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/1	t0004	1809	13	5	5	0	1	1	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0005	1810	12	4	1	7	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0006	1810	9	7	1	1	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0007	1812	8	3	1	1	0	3	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0008	1812	7	2	3	0	1	1	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0009	1812	6	6	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0010	1811	6	6	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0011	1803	3	0	0	3	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0012	1811	3	3	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0013	1810	3	1	0	2	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0014	1805	3	0	0	3	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0015	1804	2	0	2	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0016	1812	2	1	0	1	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0017	1811	2	0	1	0	0	1	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0018	1811	2	0	0	2	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0019	1811	1	0	0	1	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0020	1810	1	0	0	0	1	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0021	1797	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0022	1810	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0023	1811	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0024	1810	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0025	1811	1	0	0	1	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0026	1812	1	0	0	1	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0027	1811	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0028	1812	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0029	1811	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0030	1811	1	0	0	1	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0031	1811	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0032	1811	1	0	1	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0033	1811	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0034	1811	1	0	0	0	0	1	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0035	1812	1	0	0	0	0	1	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	t0036	1812	1	0	0	1	0	0	copy fasta	RPS15A	chr16	18776295	18795334