JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS15A_chr16_18776295_18795334	0/0	t0037	1804	1	0	0	1	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15_chr19_1433396_1445495	1/1	t0001	64	379	98	78	142	18	41	copy fasta	RPS15	chr19	1433396	1445495
RPS15_chr19_1433396_1445495	0/0	t0002	64	1	0	0	0	0	1	copy fasta	RPS15	chr19	1433396	1445495
RPS16_chr19_39428137_39440949	1/1	t0001	191	402	89	66	186	13	46	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	t0002	191	3	3	0	0	0	0	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	t0003	191	2	0	0	0	0	2	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	t0004	191	1	1	0	0	0	0	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	t0005	191	1	0	0	0	1	0	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	t0006	191	1	1	0	0	0	0	copy fasta	RPS16	chr19	39428137	39440949
RPS17_chr15_82531750_82545457	0/1	t0001	81	454	100	76	215	18	44	copy fasta	RPS17	chr15	82531750	82545457
RPS17_chr15_82531750_82545457	0/0	t0002	81	1	0	0	1	0	0	copy fasta	RPS17	chr15	82531750	82545457
RPS18_chr6_33267075_33281511	0/1	t0001	91	369	96	68	157	14	33	copy fasta	RPS18	chr6	33267075	33281511
RPS18_chr6_33267075_33281511	0/0	t0002	91	5	0	2	0	0	3	copy fasta	RPS18	chr6	33267075	33281511
RPS18_chr6_33267075_33281511	0/0	t0003	91	1	0	0	1	0	0	copy fasta	RPS18	chr6	33267075	33281511
RPS19BP1_chr22_39524093_39537748	1/1	t0001	410	318	79	64	113	18	42	copy fasta	RPS19BP1	chr22	39524093	39537748
RPS19BP1_chr22_39524093_39537748	0/0	t0002	410	9	9	0	0	0	0	copy fasta	RPS19BP1	chr22	39524093	39537748
RPS19BP1_chr22_39524093_39537748	0/0	t0003	410	1	0	0	1	0	0	copy fasta	RPS19BP1	chr22	39524093	39537748
RPS19_chr19_41855255_41877925	1/1	t0001	1584	354	65	60	174	16	37	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0002	1584	11	11	0	0	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0003	1584	8	0	0	8	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0004	1571	5	5	0	0	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0005	1571	1	1	0	0	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0006	1571	1	1	0	0	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0007	1584	1	1	0	0	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0008	1584	1	0	0	0	0	1	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0009	1584	1	0	0	1	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0010	1584	1	0	0	1	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0011	1584	1	0	1	0	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0012	1584	1	0	0	1	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0013	1584	1	1	0	0	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0014	1584	1	1	0	0	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0015	1584	1	0	0	1	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	t0016	1584	1	0	1	0	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS20_chr8_56068054_56079506	0/1	t0001	160	276	51	64	106	14	40	copy fasta	RPS20	chr8	56068054	56079506
RPS20_chr8_56068054_56079506	0/0	t0002	160	46	32	2	12	0	0	copy fasta	RPS20	chr8	56068054	56079506
RPS20_chr8_56068054_56079506	0/0	t0003	160	5	3	2	0	0	0	copy fasta	RPS20	chr8	56068054	56079506
RPS20_chr8_56068054_56079506	0/0	t0004	160	2	0	0	2	0	0	copy fasta	RPS20	chr8	56068054	56079506
RPS20_chr8_56068054_56079506	0/0	t0005	160	1	0	0	0	0	1	copy fasta	RPS20	chr8	56068054	56079506
RPS20_chr8_56068054_56079506	0/0	t0006	160	1	0	0	0	0	1	copy fasta	RPS20	chr8	56068054	56079506
RPS21_chr20_62382103_62393520	0/0	t0001	107	411	97	82	174	16	42	copy fasta	RPS21	chr20	62382103	62393520
RPS21_chr20_62382103_62393520	0/0	t0002	107	1	1	0	0	0	0	copy fasta	RPS21	chr20	62382103	62393520
RPS23_chr5_82268320_82283354	0/0	t0001	2820	237	12	44	147	8	26	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0002	2821	38	18	5	9	2	4	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0003	2483	20	18	2	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0004	2820	11	10	1	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/1	t0005	2821	11	0	5	0	4	1	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0006	2820	8	0	6	0	0	2	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0007	2820	8	0	0	8	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0008	2811	6	4	2	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0009	2820	6	1	3	1	1	0	copy fasta	RPS23	chr5	82268320	82283354