JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS23_chr5_82268320_82283354	0/0	t0010	2821	5	0	0	2	0	3	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0011	2820	4	4	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0012	2821	4	0	0	0	0	4	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0013	2820	4	4	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0014	2820	3	3	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0015	2820	3	0	1	2	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0016	2820	3	3	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0017	2820	3	0	3	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0018	2820	3	0	0	0	0	3	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0019	2483	3	3	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0020	2811	3	3	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0021	2820	3	0	0	3	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0022	2820	2	0	1	0	0	1	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0023	2820	2	2	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0024	2820	2	2	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0025	2821	2	0	2	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0026	2820	2	0	0	1	0	1	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0027	2820	2	0	0	2	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0028	2821	2	0	0	2	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0029	2821	1	0	0	0	0	1	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0030	2820	1	1	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0031	2820	1	1	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0032	2483	1	1	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0033	2820	1	1	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0034	2821	1	1	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	1/0	t0035	2821	1	0	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0036	2821	1	1	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0037	2821	1	1	0	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0038	2820	1	0	0	1	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0039	2820	1	0	1	0	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0040	2820	1	0	0	1	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0041	2820	1	0	0	1	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0042	2820	1	0	0	1	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0043	2820	1	0	0	1	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0044	2820	1	0	0	0	1	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0045	2820	1	0	0	1	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS23_chr5_82268320_82283354	0/0	t0046	2820	1	0	0	1	0	0	copy fasta	RPS23	chr5	82268320	82283354
RPS24_chr10_78028863_78045697	1/1	t0001	142	418	92	79	187	14	44	copy fasta	RPS24	chr10	78028863	78045697
RPS24_chr10_78028863_78045697	0/0	t0002	142	7	0	0	7	0	0	copy fasta	RPS24	chr10	78028863	78045697
RPS24_chr10_78028863_78045697	0/0	t0003	142	3	3	0	0	0	0	copy fasta	RPS24	chr10	78028863	78045697
RPS24_chr10_78028863_78045697	0/0	t0004	142	2	1	1	0	0	0	copy fasta	RPS24	chr10	78028863	78045697
RPS25_chr11_119010717_119023343	1/0	t0001	106	321	63	71	134	14	38	copy fasta	RPS25	chr11	119010717	119023343
RPS25_chr11_119010717_119023343	0/0	t0002	106	26	25	1	0	0	0	copy fasta	RPS25	chr11	119010717	119023343
RPS25_chr11_119010717_119023343	0/0	t0003	106	5	5	0	0	0	0	copy fasta	RPS25	chr11	119010717	119023343
RPS25_chr11_119010717_119023343	0/0	t0004	106	3	3	0	0	0	0	copy fasta	RPS25	chr11	119010717	119023343
RPS26_chr12_56036918_56049697	0/0	t0001	794	190	10	36	112	11	21	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0002	794	70	12	16	33	3	6	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	1/0	t0003	793	19	17	1	0	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0004	795	16	14	2	0	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0005	796	12	12	0	0	0	0	copy fasta	RPS26	chr12	56036918	56049697