JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS26_chr12_56036918_56049697	0/1	t0006	795	12	0	3	8	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0007	795	11	0	3	8	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0008	795	11	3	3	0	2	3	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0009	793	10	3	0	7	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0010	794	9	8	1	0	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0011	794	5	0	3	2	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0012	793	2	1	0	1	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0013	793	2	2	0	0	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0014	794	1	0	0	1	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0015	794	1	0	0	1	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0016	794	1	0	1	0	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0017	796	1	1	0	0	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0018	794	1	0	0	1	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0019	794	1	0	0	0	0	1	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0020	796	1	0	1	0	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0021	794	1	1	0	0	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	t0022	794	1	0	0	0	0	1	copy fasta	RPS26	chr12	56036918	56049697
RPS27A_chr2_55227688_55240853	1/1	t0001	315	436	91	82	207	18	36	copy fasta	RPS27A	chr2	55227688	55240853
RPS27A_chr2_55227688_55240853	0/0	t0002	315	3	0	0	3	0	0	copy fasta	RPS27A	chr2	55227688	55240853
RPS27A_chr2_55227688_55240853	0/0	t0003	315	1	1	0	0	0	0	copy fasta	RPS27A	chr2	55227688	55240853
RPS27L_chr15_63143249_63162477	0/0	t0001	5857	73	4	9	53	1	6	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0002	5850	57	4	8	41	0	4	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0003	5781	52	6	11	24	2	9	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	1/0	t0004	5856	31	6	13	0	3	8	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0005	5858	22	0	0	17	0	5	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/1	t0006	5781	9	0	4	0	4	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0007	5857	8	0	0	8	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0008	5856	7	3	2	0	0	2	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0009	5860	7	0	0	7	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0010	5781	6	6	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0011	5857	6	6	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0012	5847	5	0	0	5	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0013	5850	5	0	3	0	1	1	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0014	5856	5	2	3	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0015	5855	5	5	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0016	5855	5	2	3	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0017	5857	5	0	0	4	0	1	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0018	5859	4	0	4	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0019	5856	4	4	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0020	5782	4	0	0	4	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0021	5857	3	0	0	3	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0022	5857	3	3	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0023	5781	3	0	3	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0024	5850	3	1	0	0	1	1	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0025	5857	3	0	0	3	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0026	5864	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0027	5865	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0028	5850	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0029	5857	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0030	5856	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477