JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS27L_chr15_63143249_63162477	0/0	t0031	5857	2	0	1	0	0	1	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0032	5857	2	0	0	0	1	1	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0033	5858	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0034	5858	2	0	0	1	0	1	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0035	5858	2	0	0	2	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0036	5865	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0037	5858	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0038	5855	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0039	5781	2	0	0	2	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0040	5780	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0041	5782	2	0	0	0	2	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0042	5855	2	0	0	2	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0043	5856	2	0	0	2	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0044	5857	2	0	2	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0045	5859	2	0	0	2	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0046	5857	2	0	2	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0047	5855	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0048	5858	2	0	0	0	0	2	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0049	5858	2	2	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0050	5851	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0051	5865	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0052	5862	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0053	5864	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0054	5860	1	0	1	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0055	5855	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0056	5861	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0057	5850	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0058	5854	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0059	5855	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0060	5780	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0061	5856	1	0	0	0	0	1	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0062	5850	1	0	0	0	0	1	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0063	5855	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0064	5857	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0065	5856	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0066	5856	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0067	5851	1	0	1	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0068	5857	1	0	1	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0069	5858	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0070	5858	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0071	5859	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0072	5856	1	0	1	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0073	5857	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0074	5856	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0075	5862	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0076	5856	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0077	5780	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0078	5851	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0079	5858	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0080	5781	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477