JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS27L_chr15_63143249_63162477	0/0	t0081	5781	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0082	5781	1	0	1	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0083	5859	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0084	5863	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0085	5782	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0086	5858	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0087	5851	1	0	0	0	1	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0088	5854	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0089	5856	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0090	5856	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0091	5857	1	0	1	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0092	5857	1	0	1	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0093	5857	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0094	5858	1	1	0	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0095	5858	1	0	1	0	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27L_chr15_63143249_63162477	0/0	t0096	5857	1	0	0	1	0	0	copy fasta	RPS27L	chr15	63143249	63162477
RPS27_chr1_153985762_153997155	0/0	t0001	98	400	82	76	188	12	42	copy fasta	RPS27	chr1	153985762	153997155
RPS27_chr1_153985762_153997155	0/0	t0002	98	2	2	0	0	0	0	copy fasta	RPS27	chr1	153985762	153997155
RPS28_chr19_8316496_8328340	1/0	t0001	1121	134	18	30	62	9	14	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0002	1121	110	31	22	44	3	10	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0003	1117	57	25	10	14	3	5	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/1	t0004	1113	39	3	6	18	1	10	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0005	1121	32	0	0	31	0	1	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0006	1121	9	1	7	0	1	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0007	1117	6	6	0	0	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0008	1121	3	2	1	0	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0009	1121	3	3	0	0	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0010	1121	2	0	2	0	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0011	1121	2	0	0	2	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0012	1121	1	0	1	0	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0013	1121	1	0	0	1	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0014	1121	1	0	0	1	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0015	1121	1	0	0	0	1	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0016	1121	1	0	1	0	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0017	1121	1	1	0	0	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS28_chr19_8316496_8328340	0/0	t0018	1121	1	0	0	1	0	0	copy fasta	RPS28	chr19	8316496	8328340
RPS29_chr14_49578577_49591380	1/0	t0001	125	334	93	76	110	16	38	copy fasta	RPS29	chr14	49578577	49591380
RPS29_chr14_49578577_49591380	0/0	t0002	125	1	1	0	0	0	0	copy fasta	RPS29	chr14	49578577	49591380
RPS2_chr16_1957058_1969826	1/1	t0001	64	437	98	80	194	14	49	copy fasta	RPS2	chr16	1957058	1969826
RPS2_chr16_1957058_1969826	0/0	t0002	104	1	0	0	0	0	1	copy fasta	RPS2	chr16	1957058	1969826
RPS3A_chr4_151094628_151109642	1/1	t0001	75	388	89	71	172	10	44	copy fasta	RPS3A	chr4	151094628	151109642
RPS3A_chr4_151094628_151109642	0/0	t0002	75	2	1	1	0	0	0	copy fasta	RPS3A	chr4	151094628	151109642
RPS3_chr11_75394518_75411907	1/1	t0001	1328	234	27	53	108	14	30	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	t0002	1328	111	43	14	45	3	6	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	t0003	1328	55	5	11	26	1	12	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	t0004	1328	5	5	0	0	0	0	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	t0005	1328	2	2	0	0	0	0	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	t0006	1328	1	0	0	1	0	0	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	t0007	1328	1	0	0	1	0	0	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	t0008	1328	1	1	0	0	0	0	copy fasta	RPS3	chr11	75394518	75411907