JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS6KA2_chr6_166404364_166632251	0/0	t0012	3630	4	0	0	4	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0013	3630	4	0	1	3	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0014	3630	4	4	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0015	3630	4	3	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0016	3630	3	3	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0017	3630	3	3	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0018	3630	2	2	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0019	3631	2	2	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0020	3629	2	2	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0021	3629	2	2	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0022	3630	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0023	3630	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0024	3630	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0025	3630	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0026	3629	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0027	3630	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0028	3630	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0029	3630	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0030	3630	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0031	3630	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0032	3630	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0033	3649	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0034	3630	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0035	3631	1	0	0	0	0	1	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0036	3630	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0037	3629	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0038	3630	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0039	3630	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0040	3630	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0041	3631	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0042	3630	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0043	3630	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0044	3629	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0045	3629	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0046	3630	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0047	3630	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA3_chrX_20144911_20271909	0/0	t0001	5759	98	3	19	59	4	13	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0002	5759	55	31	12	6	3	3	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0003	5759	13	11	2	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	1/1	t0004	5765	7	1	2	0	2	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0005	5759	5	2	3	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0006	5759	4	3	1	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0007	5759	3	3	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0008	5759	2	2	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0009	5759	2	0	0	2	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0010	5759	2	0	0	2	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0011	5765	1	0	0	0	0	1	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0012	5765	1	0	0	1	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0013	5762	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0014	5759	1	0	1	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909