JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS6KA3_chrX_20144911_20271909	0/0	t0015	5759	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0016	5759	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0017	5759	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0018	5756	1	0	1	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0019	5758	1	0	0	1	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0020	5759	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0021	5759	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0022	5759	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0023	5759	1	0	1	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0024	5757	1	0	0	0	0	1	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0025	5759	1	0	1	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0026	5758	1	0	0	1	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0027	5759	1	0	0	0	0	1	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0028	5759	1	0	0	1	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0029	5759	1	0	0	0	0	1	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0030	5760	1	0	0	1	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	t0031	5760	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA4_chr11_64354162_64377215	1/1	t0001	810	392	90	73	163	16	48	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	t0002	810	5	5	0	0	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	t0003	810	2	0	0	2	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	t0004	810	1	0	0	1	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	t0005	810	1	1	0	0	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	t0006	810	1	0	1	0	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA5_chr14_90842861_91065641	0/0	t0001	24443	9	0	1	8	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0002	24428	8	0	0	8	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0003	24420	5	0	3	2	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0004	24421	4	0	0	4	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0005	24423	4	4	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0006	24438	3	0	0	1	0	2	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0007	24439	3	0	0	2	1	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0008	24424	3	0	0	3	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0009	24441	3	0	0	3	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0010	24440	3	0	0	3	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0011	24431	3	3	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0012	24429	2	0	0	2	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0013	24365	2	2	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0014	24365	2	2	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0015	24439	2	0	0	0	0	2	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0016	24365	2	0	0	0	0	2	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0017	24439	2	0	2	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0018	24426	2	0	2	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0019	24437	2	0	1	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0020	24429	2	0	0	2	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0021	24428	2	0	2	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0022	24421	2	0	2	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0023	24366	2	2	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0024	24359	2	2	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0025	24443	2	0	1	0	1	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0026	24444	2	0	1	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0027	24420	2	0	0	1	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641