Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B4GALT1_chr9_33105642_33172336	0/0	t0014	2981	4	0	0	4	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0015	2977	4	0	0	4	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0016	2980	4	4	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0017	2965	4	0	0	4	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0018	2977	4	0	1	2	0	1	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0019	2980	4	4	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0020	2975	3	0	0	3	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0021	2980	3	2	1	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0022	2982	3	0	0	2	1	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0023	2980	3	2	1	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0024	2976	3	0	3	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0025	2976	3	0	3	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/1	t0026	2981	2	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0027	2978	2	0	0	0	0	2	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0028	2980	2	0	0	2	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0029	2980	2	2	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0030	2978	2	2	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0031	2979	2	2	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0032	2978	2	0	1	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0033	2979	2	2	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0034	2977	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0035	2971	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0036	2980	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0037	2982	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0038	2977	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0039	2977	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0040	2978	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0041	2980	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0042	2977	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0043	2980	1	0	0	0	1	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0044	2976	1	0	0	0	0	1	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0045	2977	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0046	2978	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0047	2976	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0048	2977	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0049	2977	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0050	2978	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0051	2981	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0052	2977	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0053	2971	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0054	2976	1	0	1	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0055	2980	1	0	1	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0056	2971	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0057	2971	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0058	2978	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0059	2981	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0060	2981	1	0	1	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0061	2980	1	0	1	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0062	2977	1	0	1	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0063	2970	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336