JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS6KA5_chr14_90842861_91065641	0/0	t0078	24439	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0079	24440	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0080	24419	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0081	24437	1	0	0	0	1	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0082	24433	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0083	24422	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0084	24421	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0085	24442	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0086	24441	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0087	24440	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0088	24438	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0089	24439	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0090	24440	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	1/0	t0091	24421	1	0	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0092	24355	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0093	24416	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0094	24355	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0095	24365	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0096	24425	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0097	24425	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0098	24428	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0099	24427	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0100	24427	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0101	24427	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0102	24425	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0103	24428	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0104	24427	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0105	24427	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0106	24427	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0107	24439	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0108	24436	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0109	24429	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0110	24428	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0111	24427	1	0	0	0	1	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0112	24428	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0113	24427	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0114	24425	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0115	24425	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0116	24428	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0117	24428	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0118	24420	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0119	24420	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0120	24428	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0121	24431	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0122	24427	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0123	24430	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0124	24427	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0125	24439	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0126	24430	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0127	24428	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641