JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS6KA5_chr14_90842861_91065641	0/0	t0128	24430	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0129	24438	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0130	24429	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0131	24445	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0132	24429	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0133	24420	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0134	24365	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0135	24420	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0136	24432	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0137	24429	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0138	24424	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0139	24442	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0140	24428	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0141	24422	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0142	24438	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0143	24427	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0144	24437	1	0	0	0	1	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0145	24443	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0146	24437	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0147	24364	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0148	24367	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0149	24360	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0150	24360	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0151	24444	1	0	0	0	1	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0152	24434	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0153	24445	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0154	24444	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0155	24442	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0156	24444	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0157	24371	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0158	24371	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0159	24435	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0160	24444	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0161	24435	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0162	24445	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0163	24364	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0164	24359	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0165	24443	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0166	24441	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0167	24436	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0168	24443	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0169	24362	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0170	24363	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0171	24425	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0172	24435	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0173	24424	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0174	24423	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0175	24359	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0176	24424	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0177	24424	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641