JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS6KA5_chr14_90842861_91065641	0/0	t0228	24423	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0229	24423	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0230	24425	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0231	24425	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0232	24439	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0233	24440	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0234	24440	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0235	24438	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0236	24427	1	0	1	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0237	24432	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0238	24437	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0239	24370	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0240	24369	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0241	24369	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0242	24371	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0243	24370	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0244	24366	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0245	24441	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0246	24435	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	t0247	24436	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA6_chrX_84053350_84193199	0/0	t0001	6229	25	4	0	19	0	2	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0002	6228	25	9	5	7	3	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0003	6229	23	0	6	16	0	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0004	6230	21	0	1	17	0	3	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0005	6229	11	1	8	1	1	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0006	6229	10	3	4	2	1	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0007	6232	9	0	4	4	0	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0008	6216	6	1	0	4	0	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0009	6222	4	0	0	4	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0010	6231	4	0	0	3	0	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0011	6229	4	4	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0012	6215	4	1	1	2	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/1	t0013	6217	4	1	2	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0014	6224	3	3	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0015	6228	3	0	0	3	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0016	6228	3	0	0	3	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0017	6230	3	0	1	0	0	2	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0018	6228	3	2	1	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0019	6227	3	3	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0020	6236	2	0	0	2	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0021	6235	2	0	0	2	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0022	6232	2	0	0	2	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0023	6233	2	0	0	2	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0024	6232	2	0	0	2	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0025	6231	2	0	1	0	0	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0026	6232	2	0	1	1	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0027	6230	2	0	0	0	0	2	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0028	6230	2	0	1	1	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	1/0	t0029	6228	2	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0030	6221	2	2	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199