JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS6KA6_chrX_84053350_84193199	0/0	t0081	6228	1	0	1	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0082	6228	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0083	6229	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0084	6230	1	0	0	1	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0085	6227	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0086	6227	1	0	0	0	0	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0087	6226	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0088	6225	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0089	6227	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0090	6226	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0091	6230	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0092	6229	1	0	0	1	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0093	6224	1	0	1	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0094	6223	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0095	6224	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0096	6226	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0097	6225	1	0	1	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0098	6224	1	0	1	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0099	6216	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0100	6219	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0101	6218	1	0	0	1	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0102	6217	1	0	1	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0103	6214	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0104	6215	1	0	0	0	0	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0105	6215	1	0	0	1	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0106	6216	1	0	0	1	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0107	6215	1	0	0	1	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0108	6210	1	0	1	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0109	6207	1	0	0	1	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0110	6215	1	0	0	0	0	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	t0111	6235	1	0	0	1	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KB1_chr17_59888121_59955574	1/0	t0001	3851	107	25	18	48	1	14	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/1	t0002	3857	74	1	10	48	0	14	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0003	3853	33	3	6	22	0	2	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0004	3856	21	5	10	4	1	1	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0005	3855	21	18	2	1	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0006	3854	15	14	1	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0007	3857	10	7	3	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0008	3851	3	0	3	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0009	3853	2	2	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0010	3857	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0011	3857	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0012	3856	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0013	3857	1	0	0	1	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0014	3857	1	0	0	1	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0015	3857	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0016	3851	1	0	0	0	0	1	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0017	3853	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0018	3850	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0019	3853	1	0	0	0	0	1	copy fasta	RPS6KB1	chr17	59888121	59955574