JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS6KB1_chr17_59888121_59955574	0/0	t0020	3851	1	0	0	0	0	1	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0021	3851	1	0	0	1	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0022	3851	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0023	3851	1	0	1	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0024	3851	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0025	3851	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0026	3855	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	t0027	3854	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB2_chr11_67423494_67440401	1/1	t0001	285	226	63	26	97	9	29	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	t0002	285	121	26	38	47	4	6	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	t0003	285	29	1	2	24	1	1	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	t0004	285	2	2	0	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KC1_chr1_213046241_213279774	0/0	t0001	2305	172	45	28	83	4	12	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	1/1	t0002	2305	105	8	20	60	6	9	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0003	2305	16	15	1	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0004	2305	10	1	4	4	0	1	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0005	2301	4	3	1	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0006	2305	4	4	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0007	2305	3	3	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0008	2305	2	0	0	0	2	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0009	2305	2	2	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0010	2305	2	2	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0011	2305	1	0	0	1	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0012	2305	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0013	2305	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0014	2305	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0015	2305	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0016	2305	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0017	2305	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0018	2305	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0019	2305	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	t0020	2305	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KL1_chr14_74898951_74928260	0/0	t0001	3675	60	15	10	30	1	4	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/1	t0002	3673	53	1	9	34	2	6	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0003	3675	42	0	7	27	2	6	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0004	3674	31	0	5	23	0	3	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0005	3674	16	2	4	8	0	2	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0006	3671	13	8	2	0	0	3	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0007	3676	12	6	1	5	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0008	3671	12	7	1	4	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0009	3671	12	0	6	6	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0010	3675	10	4	5	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0011	3677	8	0	1	6	1	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0012	3677	7	1	4	1	1	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	1/0	t0013	3673	5	0	2	0	1	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0014	3674	5	5	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0015	3674	5	0	0	5	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0016	3675	4	3	1	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0017	3671	3	3	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0018	3671	3	0	0	3	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260