JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS6KL1_chr14_74898951_74928260	0/0	t0019	3674	3	3	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0020	3671	3	3	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0021	3673	3	1	2	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0022	3673	2	2	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0023	3675	2	0	0	2	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0024	3674	2	0	1	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0025	3673	2	2	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0026	3675	2	0	0	0	0	2	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0027	3675	2	1	1	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0028	3672	2	2	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0029	3672	2	0	2	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0030	3670	2	2	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0031	3673	2	0	0	2	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0032	3671	2	0	0	0	0	2	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0033	3673	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0034	3671	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0035	3672	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0036	3675	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0037	3675	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0038	3678	1	0	0	0	1	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0039	3675	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0040	3675	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0041	3675	1	0	1	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0042	3675	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0043	3675	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0044	3672	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0045	3671	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0046	3671	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0047	3675	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0048	3674	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0049	3674	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0050	3676	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0051	3674	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0052	3674	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0053	3677	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0054	3675	1	0	1	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0055	3678	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0056	3672	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0057	3671	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0058	3672	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0059	3671	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0060	3671	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0061	3671	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0062	3671	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0063	3671	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0064	3671	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0065	3677	1	0	1	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0066	3673	1	0	0	0	1	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0067	3673	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0068	3674	1	0	1	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260