JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS6KL1_chr14_74898951_74928260	0/0	t0069	3674	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	t0070	3674	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6_chr9_19370715_19385236	1/0	t0001	620	337	40	67	174	14	41	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/1	t0002	603	38	23	5	2	1	6	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0003	620	22	21	1	0	0	0	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0004	603	11	10	1	0	0	0	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0005	620	3	3	0	0	0	0	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0006	603	3	2	1	0	0	0	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0007	620	2	0	0	2	0	0	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0008	620	1	0	0	1	0	0	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0009	620	1	0	0	0	0	1	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0010	603	1	0	1	0	0	0	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0011	603	1	1	0	0	0	0	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0012	620	1	0	0	0	1	0	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	t0013	620	1	0	0	1	0	0	copy fasta	RPS6	chr9	19370715	19385236
RPS7_chr2_3570260_3585920	1/0	t0001	148	396	99	82	158	16	40	copy fasta	RPS7	chr2	3570260	3585920
RPS7_chr2_3570260_3585920	0/1	t0002	148	21	1	4	10	0	5	copy fasta	RPS7	chr2	3570260	3585920
RPS7_chr2_3570260_3585920	0/0	t0003	148	10	0	0	10	0	0	copy fasta	RPS7	chr2	3570260	3585920
RPS7_chr2_3570260_3585920	0/0	t0004	148	2	0	0	1	0	1	copy fasta	RPS7	chr2	3570260	3585920
RPS7_chr2_3570260_3585920	0/0	t0005	148	1	0	0	1	0	0	copy fasta	RPS7	chr2	3570260	3585920
RPS8_chr1_44770540_44783779	1/1	t0001	152	397	88	67	180	16	44	copy fasta	RPS8	chr1	44770540	44783779
RPS8_chr1_44770540_44783779	0/0	t0002	152	5	4	1	0	0	0	copy fasta	RPS8	chr1	44770540	44783779
RPS9_chr19_54195858_54212647	0/1	t0001	129	457	90	88	212	16	50	copy fasta	RPS9	chr19	54195858	54212647
RPSA2_chr19_23758004_23833868	0/0	t0001	2814	37	12	5	15	1	4	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0002	2812	30	4	7	18	1	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0003	2811	29	2	9	16	2	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0004	2815	18	0	3	14	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0005	2812	10	3	2	5	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0006	2815	10	3	3	3	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0007	2814	9	2	1	5	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0008	2811	8	1	2	1	0	4	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0009	2812	7	0	2	5	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0010	2811	7	0	2	5	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0011	2810	6	0	0	6	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0012	2810	6	1	4	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0013	1255	5	4	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0014	2815	5	1	0	4	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0015	2815	5	0	0	5	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/1	t0016	2813	4	0	1	2	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0017	2814	4	4	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0018	2815	4	0	2	0	0	2	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0019	2810	3	1	1	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0020	2816	3	0	0	3	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0021	2816	3	3	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0022	2815	3	0	0	3	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0023	2811	3	3	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0024	1253	2	2	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0025	2815	2	2	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0026	2811	2	0	0	2	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0027	2811	2	2	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868