Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B4GALT1_chr9_33105642_33172336	1/0	t0064	2980	1	0	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0065	2979	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0066	3012	1	0	1	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0067	2978	1	0	0	0	1	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0068	3020	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0069	2980	1	0	1	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0070	2976	1	0	0	1	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0071	2976	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	t0072	2977	1	0	0	0	0	1	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT2_chr1_43974210_43996168	1/1	t0001	1075	233	35	57	102	8	29	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0002	1075	93	30	6	47	4	6	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0003	1066	45	2	4	37	0	2	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0004	1075	14	12	2	0	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0005	1078	12	8	2	0	2	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0006	1075	2	2	0	0	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0007	1075	2	2	0	0	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0008	1078	1	0	1	0	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0009	1075	1	1	0	0	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0010	1075	1	0	0	0	0	1	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0011	1075	1	0	0	1	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	t0012	1075	1	0	0	1	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT3_chr1_161166310_161182507	1/0	t0001	752	252	63	44	101	13	30	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT3_chr1_161166310_161182507	0/1	t0002	752	117	8	23	70	5	10	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT3_chr1_161166310_161182507	0/0	t0003	752	1	0	1	0	0	0	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT3_chr1_161166310_161182507	0/0	t0004	752	1	0	0	1	0	0	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT3_chr1_161166310_161182507	0/0	t0005	752	1	0	0	0	0	1	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT3_chr1_161166310_161182507	0/0	t0006	752	1	0	0	0	0	1	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT3_chr1_161166310_161182507	0/0	t0007	752	1	1	0	0	0	0	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT4_chr3_119206742_119245878	0/0	t0001	1200	155	31	16	100	1	7	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/1	t0002	1200	118	6	24	63	7	17	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0003	1200	70	16	16	23	8	7	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0004	1200	35	7	3	16	0	9	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0005	1200	13	0	11	0	0	2	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0006	1200	9	8	1	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	1/0	t0007	1200	8	5	2	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0008	1200	5	5	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0009	1200	5	2	1	2	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0010	1200	3	3	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0011	1200	3	3	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0012	1200	2	2	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0013	1200	2	0	2	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0014	1200	2	2	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0015	1200	1	1	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0016	1200	1	0	0	1	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0017	1200	1	1	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0018	1200	1	1	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0019	1200	1	1	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	t0020	1200	1	0	0	1	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT5_chr20_49627945_49718878	0/0	t0001	3562	102	10	18	61	6	7	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0002	3564	49	2	9	31	2	5	copy fasta	B4GALT5	chr20	49627945	49718878