JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPSA2_chr19_23758004_23833868	0/0	t0078	2811	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0079	2812	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0080	2812	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0081	2812	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0082	2811	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0083	2810	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0084	2811	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0085	2812	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0086	2812	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0087	2811	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0088	2810	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0089	2811	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0090	2810	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0091	2812	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0092	2811	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0093	2813	1	0	0	0	1	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0094	2812	1	0	0	0	1	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0095	2813	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0096	2813	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0097	2813	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0098	2812	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0099	2812	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0100	2814	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0101	2812	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0102	2811	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0103	2814	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0104	2813	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0105	2816	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0106	2814	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0107	2815	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0108	2816	1	0	0	0	1	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0109	2814	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0110	2814	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0111	2815	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0112	2815	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0113	2814	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0114	2815	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0115	2814	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0116	2812	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0117	2814	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0118	2813	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0119	2813	1	0	0	0	1	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0120	2817	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0121	2816	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0122	2813	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0123	2816	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0124	2816	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0125	2815	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0126	2813	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0127	2815	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868