JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPTOR_chr17_80539838_80971368	0/0	t0065	2834	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0066	2832	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0067	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0068	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0069	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0070	2834	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0071	2833	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0072	2832	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0073	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0074	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0075	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0076	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0077	2832	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0078	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0079	2834	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0080	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0081	2833	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0082	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0083	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0084	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0085	2834	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0086	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0087	2831	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0088	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0089	2833	1	0	0	1	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0090	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0091	2832	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0092	2833	1	0	0	1	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0093	2831	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0094	2833	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0095	2832	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0096	2834	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0097	2831	1	0	0	0	1	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0098	2831	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPUSD1_chr16_779974_793381	1/0	t0001	1110	199	18	48	104	9	19	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/1	t0002	1110	115	36	19	43	5	11	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0003	1110	24	6	7	5	0	6	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0004	1110	13	0	1	8	0	4	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0005	1107	12	9	3	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0006	1110	9	9	0	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0007	1110	9	8	1	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0008	1110	4	0	0	4	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0009	1110	3	3	0	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0010	1107	3	0	0	3	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0011	1110	3	0	0	0	2	1	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0012	1110	3	2	1	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0013	1110	2	0	0	0	0	2	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0014	1110	2	1	1	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0015	1110	1	0	1	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0016	1110	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381