JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPUSD1_chr16_779974_793381	0/0	t0017	1110	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0018	1110	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0019	1110	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0020	1110	1	1	0	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0021	1110	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0022	1110	1	1	0	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	t0023	1110	1	0	0	0	0	1	copy fasta	RPUSD1	chr16	779974	793381
RPUSD2_chr15_40564299_40579949	1/1	t0001	728	272	51	43	137	6	33	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	t0002	728	83	25	21	20	4	13	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	t0003	728	22	0	1	21	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	t0004	728	7	7	0	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	t0005	728	5	4	1	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	t0006	728	3	3	0	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD3_chr3_9832849_9849008	1/1	t0001	186	423	71	76	214	17	43	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	t0002	186	14	10	4	0	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	t0003	186	13	13	0	0	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	t0004	186	2	0	0	0	1	1	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD4_chr11_126197096_126216650	0/1	t0001	1335	253	29	50	130	11	32	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	1/0	t0002	1335	75	50	16	0	5	3	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0003	1335	63	8	11	33	0	11	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0004	1335	7	0	0	7	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0005	1335	4	4	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0006	1335	3	3	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0007	1335	2	0	2	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0008	1335	2	0	0	2	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0009	1335	2	2	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0010	1335	1	0	0	0	0	1	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0011	1335	1	0	1	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0012	1335	1	0	0	0	0	1	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0013	1297	1	1	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	t0014	1335	1	1	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RRAD_chr16_66916685_66930535	1/1	t0001	534	377	99	64	159	13	40	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	t0002	534	3	0	3	0	0	0	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	t0003	534	2	0	0	0	0	2	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	t0004	534	1	0	0	0	1	0	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	t0005	534	1	0	0	1	0	0	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	t0006	534	1	1	0	0	0	0	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	t0007	534	1	0	1	0	0	0	copy fasta	RRAD	chr16	66916685	66930535
RRAGA_chr9_19044427_19056025	1/0	t0001	658	346	45	57	190	14	39	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/1	t0002	658	56	28	9	8	4	6	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/0	t0003	658	25	14	1	5	0	5	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/0	t0004	658	11	11	0	0	0	0	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/0	t0005	658	3	0	0	3	0	0	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/0	t0006	658	2	0	0	2	0	0	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/0	t0007	658	1	0	0	1	0	0	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/0	t0008	658	1	0	1	0	0	0	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/0	t0009	658	1	0	0	1	0	0	copy fasta	RRAGA	chr9	19044427	19056025
RRAGB_chrX_55712749_55763774	1/1	t0001	1011	167	41	25	78	5	16	copy fasta	RRAGB	chrX	55712749	55763774
RRAGB_chrX_55712749_55763774	0/0	t0002	1011	104	35	24	33	2	10	copy fasta	RRAGB	chrX	55712749	55763774
RRAGB_chrX_55712749_55763774	0/0	t0003	1011	2	0	0	2	0	0	copy fasta	RRAGB	chrX	55712749	55763774