JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRAGB_chrX_55712749_55763774	0/0	t0004	1012	1	0	0	1	0	0	copy fasta	RRAGB	chrX	55712749	55763774
RRAGB_chrX_55712749_55763774	0/0	t0005	1011	1	0	0	1	0	0	copy fasta	RRAGB	chrX	55712749	55763774
RRAGB_chrX_55712749_55763774	0/0	t0006	1011	1	0	0	1	0	0	copy fasta	RRAGB	chrX	55712749	55763774
RRAGC_chr1_38833198_38864772	0/1	t0001	1482	265	71	46	117	11	19	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0002	1482	75	0	8	57	0	10	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0003	1483	16	1	4	8	1	2	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0004	1481	13	1	5	0	4	3	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0005	1484	11	5	3	1	0	2	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0006	1482	9	9	0	0	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	1/0	t0007	1482	6	0	0	0	2	3	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0008	1483	5	0	0	5	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0009	1482	4	3	0	0	0	1	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0010	1483	3	3	0	0	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0011	1482	1	0	1	0	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0012	1482	1	0	0	1	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0013	1482	1	0	1	0	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0014	1483	1	1	0	0	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0015	1482	1	0	0	0	0	1	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0016	1482	1	0	0	1	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0017	1482	1	0	0	1	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0018	1482	1	0	0	1	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0019	1482	1	0	0	1	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0020	1482	1	0	0	0	0	1	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	t0021	1462	1	0	0	1	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGD_chr6_89359616_89417273	0/0	t0001	3721	75	10	20	35	5	5	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0002	3722	51	0	6	44	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/1	t0003	3720	48	1	4	32	1	9	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0004	3725	31	15	5	7	2	2	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0005	3721	11	0	4	1	3	3	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0006	3721	10	3	2	0	1	4	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0007	3724	10	9	1	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0008	3724	10	2	3	5	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0009	3725	9	0	1	3	2	3	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0010	3718	7	0	0	7	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0011	3721	7	6	1	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0012	3726	7	7	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	1/0	t0013	3721	6	0	2	0	2	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0014	3720	5	5	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0015	3724	5	5	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0016	3722	5	5	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0017	3719	4	0	0	4	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0018	3721	4	0	0	4	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0019	3725	4	4	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0020	3720	3	0	2	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0021	3724	3	3	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0022	3723	3	3	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0023	3724	3	3	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0024	3725	3	0	3	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0025	3725	3	0	1	0	1	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0026	3722	2	2	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273