JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRAGD_chr6_89359616_89417273	0/0	t0027	3720	2	0	2	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0028	3720	2	0	1	1	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0029	3721	2	0	0	2	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0030	3725	2	0	1	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0031	3726	2	2	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0032	3717	1	0	0	1	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0033	3722	1	0	0	1	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0034	3720	1	0	1	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0035	3721	1	0	1	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0036	3721	1	0	0	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0037	3720	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0038	3722	1	0	0	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0039	3720	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0040	3720	1	0	0	0	1	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0041	3720	1	0	1	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0042	3721	1	0	0	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0043	3719	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0044	3720	1	0	0	1	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0045	3720	1	0	1	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0046	3721	1	0	0	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0047	3722	1	0	0	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0048	3722	1	0	0	1	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0049	3722	1	0	1	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0050	3722	1	0	0	1	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0051	3722	1	0	0	1	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0052	3718	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0053	3720	1	0	0	1	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0054	3721	1	0	0	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0055	3725	1	0	1	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0056	3724	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0057	3724	1	0	0	1	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0058	3725	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0059	3725	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0060	3724	1	0	0	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0061	3725	1	0	1	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0062	3726	1	0	0	1	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0063	3723	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	t0064	3725	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAS2_chr11_14272922_14364183	1/0	t0001	1729	194	63	28	72	14	16	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0002	1729	63	8	15	24	2	14	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0003	1729	7	0	0	7	0	0	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0004	1730	6	3	1	2	0	0	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0005	1729	2	0	0	0	0	2	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0006	1730	1	0	0	1	0	0	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0007	1729	1	1	0	0	0	0	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0008	1729	1	1	0	0	0	0	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0009	1729	1	1	0	0	0	0	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0010	1729	1	0	0	0	0	1	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0011	1729	1	0	0	0	0	1	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	t0012	1729	1	1	0	0	0	0	copy fasta	RRAS2	chr11	14272922	14364183