JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRAS_chr19_49630292_49645143	1/1	t0001	330	402	92	81	173	10	44	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	t0002	330	3	0	0	3	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	t0003	330	2	0	0	2	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	t0004	330	2	0	0	2	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	t0005	330	2	0	1	0	0	1	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	t0006	330	1	0	0	1	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	t0007	330	1	0	0	1	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	t0008	330	1	0	0	0	0	1	copy fasta	RRAS	chr19	49630292	49645143
RRBP1_chr20_17608679_17687242	0/1	t0001	816	124	4	38	47	9	25	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	1/0	t0002	817	102	81	6	13	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0003	817	96	1	16	69	2	8	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0004	816	8	0	1	6	1	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0005	816	7	0	0	5	0	2	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0006	817	2	2	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0007	833	1	0	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0008	817	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0009	816	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0010	817	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0011	817	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0012	817	1	0	0	0	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0013	817	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0014	816	1	0	0	0	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0015	817	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0016	817	1	1	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	t0017	816	1	0	0	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RREB1_chr6_7102961_7256980	0/0	t0001	3395	41	2	13	15	5	6	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	1/0	t0002	3397	27	2	6	13	0	5	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0003	3391	25	5	6	9	3	2	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0004	3386	19	5	1	13	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0005	3391	11	1	2	2	3	3	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/1	t0006	3390	11	5	3	0	0	2	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0007	3392	11	0	4	7	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0008	3393	9	1	3	2	1	2	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0009	3389	8	0	0	8	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0010	3399	8	0	3	4	1	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0011	3394	6	0	0	6	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0012	3391	5	4	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0013	3393	5	5	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0014	3394	5	5	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0015	3384	4	4	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0016	3395	4	0	2	2	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0017	3394	4	2	1	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0018	3401	4	3	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0019	3383	3	2	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0020	3387	3	0	0	3	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0021	3386	3	3	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0022	3391	3	0	2	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0023	3405	3	1	0	2	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0024	3378	2	1	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0025	3383	2	0	0	0	0	2	copy fasta	RREB1	chr6	7102961	7256980