Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B4GALT5_chr20_49627945_49718878	1/0	t0003	3556	47	11	12	17	2	4	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0004	3562	39	6	7	22	1	3	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0005	3551	21	0	3	16	0	2	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0006	3552	6	5	1	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0007	3556	5	0	0	5	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0008	3551	5	5	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0009	3562	5	5	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/1	t0010	3562	5	4	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0011	3555	5	0	0	5	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0012	3563	4	4	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0013	3561	4	0	0	3	0	1	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0014	3545	3	0	1	2	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0015	3562	3	3	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0016	3562	3	0	0	3	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0017	3562	3	0	0	3	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0018	3562	3	2	1	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0019	3562	2	1	1	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0020	3564	2	0	0	2	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0021	3564	2	2	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0022	3563	2	2	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0023	3563	2	2	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0024	3562	2	1	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0025	3563	2	0	0	2	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0026	3557	2	1	1	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0027	3563	2	0	2	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0028	3557	2	2	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0029	3564	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0030	3556	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0031	3551	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0032	3545	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0033	3545	1	1	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0034	3556	1	1	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0035	3562	1	1	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0036	3556	1	1	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0037	3561	1	1	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0038	3564	1	1	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0039	3556	1	1	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0040	3563	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0041	3561	1	0	0	0	0	1	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0042	3564	1	0	1	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0043	3562	1	1	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0044	3562	1	1	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0045	3564	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0046	3556	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0047	3556	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0048	3556	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0049	3563	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0050	3558	1	1	0	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0051	3561	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0052	3562	1	0	0	0	0	1	copy fasta	B4GALT5	chr20	49627945	49718878