JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RREB1_chr6_7102961_7256980	0/0	t0076	3403	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0077	3394	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0078	3400	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0079	3393	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0080	3394	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0081	3396	1	0	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	t0082	3395	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RRH_chr4_109822972_109849942	0/1	t0001	802	145	19	30	66	11	18	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0002	802	118	22	18	62	4	12	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0003	802	54	3	15	28	1	7	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0004	802	32	0	0	29	0	3	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0005	802	10	10	0	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0006	802	10	10	0	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0007	802	10	9	1	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	1/0	t0008	802	10	7	2	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0009	802	3	3	0	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0010	802	2	2	0	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0011	802	2	0	1	0	0	1	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0012	802	2	2	0	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0013	802	1	0	0	0	0	1	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0014	802	1	0	1	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0015	802	1	1	0	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	t0016	802	1	0	0	1	0	0	copy fasta	RRH	chr4	109822972	109849942
RRM1_chr11_4089799_4143932	0/1	t0001	763	272	54	52	124	6	35	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	1/0	t0002	764	80	24	15	33	2	5	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	t0003	762	13	12	1	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	t0004	764	1	0	1	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	t0005	763	1	0	1	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	t0006	763	1	0	0	1	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM2B_chr8_102199502_102243961	1/1	t0001	3719	273	53	52	134	6	26	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0002	3720	21	6	4	2	3	6	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0003	3719	21	0	13	0	0	8	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0004	3719	13	13	0	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0005	3707	10	2	0	5	3	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0006	3719	5	0	0	5	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0007	3719	4	3	1	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0008	3719	4	3	1	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0009	3699	4	0	2	2	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0010	3719	2	1	0	1	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0011	3719	2	1	1	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0012	3717	2	0	0	2	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0013	3719	2	2	0	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0014	3719	2	2	0	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0015	3719	2	0	0	0	2	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0016	3719	2	0	0	0	0	2	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0017	3719	1	1	0	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0018	3717	1	0	0	1	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0019	3719	1	0	1	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0020	3719	1	0	0	0	1	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0021	3720	1	0	0	1	0	0	copy fasta	RRM2B	chr8	102199502	102243961