JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRM2B_chr8_102199502_102243961	0/0	t0022	3719	1	0	0	1	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0023	3719	1	0	0	0	0	1	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0024	3719	1	0	0	1	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0025	3719	1	0	1	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0026	3720	1	1	0	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0027	3719	1	0	0	0	0	1	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0028	3719	1	0	0	1	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0029	3719	1	1	0	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0030	3719	1	1	0	0	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0031	3719	1	0	0	1	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0032	3727	1	0	0	0	1	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	t0033	3715	1	0	0	1	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2_chr2_10117739_10136414	0/0	t0001	2089	132	35	18	60	9	10	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0002	2090	112	6	28	62	4	12	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0003	2089	26	6	13	1	1	5	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0004	2090	16	10	3	1	0	2	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0005	2089	15	15	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/1	t0006	2089	14	5	5	0	1	2	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	1/0	t0007	2089	11	0	2	5	1	2	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0008	2089	4	0	0	4	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0009	2088	4	0	1	3	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0010	2086	3	3	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0011	2089	3	3	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0012	2089	3	3	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0013	2089	2	0	2	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0014	2089	1	1	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0015	2089	1	0	1	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0016	2089	1	1	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0017	2090	1	1	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0018	2088	1	1	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0019	2088	1	1	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0020	2089	1	1	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0021	2088	1	0	1	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0022	2090	1	0	0	0	0	1	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0023	2090	1	0	0	1	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0024	2090	1	0	0	1	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0025	2089	1	1	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	t0026	2090	1	1	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRN3_chr16_15055033_15099272	0/1	t0001	1751	278	75	47	107	15	33	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0002	1751	64	5	11	44	0	4	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0003	1751	46	1	12	24	2	7	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0004	1751	4	4	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0005	1751	2	2	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0006	1751	2	0	0	2	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0007	1751	1	0	0	0	1	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0008	1751	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0009	1751	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0010	1751	1	1	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0011	1751	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0012	1751	1	0	0	0	0	1	copy fasta	RRN3	chr16	15055033	15099272