JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRN3_chr16_15055033_15099272	0/0	t0013	1751	1	0	1	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0014	1751	1	0	0	0	0	1	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0015	1751	1	0	1	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0016	1751	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	t0017	1751	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRP12_chr10_97351701_97406340	1/1	t0001	503	395	92	70	179	16	36	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	t0002	503	1	1	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	t0003	503	1	1	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	t0004	503	1	1	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	t0005	503	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	t0006	503	1	1	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP15_chr1_218280293_218342983	0/0	t0001	6916	35	7	10	15	2	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	1/0	t0002	6917	34	9	7	12	3	2	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/1	t0003	6916	27	1	8	11	1	5	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0004	6912	25	0	2	18	2	3	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0005	6911	23	0	7	14	0	2	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0006	6915	17	2	1	11	1	2	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0007	6917	15	0	5	9	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0008	6913	14	0	2	7	2	3	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0009	6918	11	4	4	2	1	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0010	6924	11	1	0	9	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0011	6915	8	0	0	8	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0012	6895	6	0	0	6	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0013	6911	5	5	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0014	6913	5	4	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0015	6913	5	4	0	0	1	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0016	6914	5	0	2	2	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0017	6916	5	0	0	5	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0018	6923	5	0	0	5	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0019	6911	4	3	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0020	6910	4	3	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0021	6912	4	4	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0022	6912	4	4	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0023	6922	4	0	0	4	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0024	6913	3	0	0	0	3	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0025	6916	3	0	0	3	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0026	6918	3	3	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0027	6918	3	0	2	0	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0028	6911	2	2	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0029	6909	2	2	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0030	6914	2	0	2	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0031	6914	2	0	0	2	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0032	6915	2	0	0	1	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0033	6917	2	1	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0034	6917	2	0	0	2	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0035	6917	2	1	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0036	6921	2	2	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0037	6902	2	2	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0038	6902	2	2	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0039	6918	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983